当前解析结果
SmilChr07G002661| 统一新 Gene ID | SmilChr07G002661 |
|---|---|
| 名称 | SmilChr07G002661 |
| 描述 | histidinol-phosphate aminotransferase, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25828757 - 25832749 / + |
| NCBI Gene ID | LOC130993727 |
|---|---|
| GeneID | 130993727 |
| locus_tag | - |
| NCBI Name | LOC130993727 |
| 原始查询 | SmilChr07G002661 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | histidinol-phosphate aminotransferase, chloroplastic-like |
| 产物 | histidinol-phosphate aminotransferase%2C chloroplastic-like |
| Arabidopsis | AT5G10330 (HPA1)histidinol phosphate aminotransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830897] identity=74.9; qcov=0.974; evalue=0; confidence=high |
| Rice | Os02g0709200- identity=76.1; qcov=0.941; evalue=0; confidence=high |
| GO | GO:0000105 (L-histidine biosynthetic process); GO:0004400 (L-histidinol-phosphate:2-oxoglutarate transaminase activity); GO:0030170 (pyridoxal phosphate binding) |
| KEGG | smil00340 (Histidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00155 (Aminotran_1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993727 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774751.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057774751.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774751.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774751.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774751.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25830117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:25830321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr7:25830561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D6 |
Chr7:25830862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B26,D8 |
Chr7:25831182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B126,B25,B46,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774751.1PF00155
Aminotran_1_2 99-420 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774751.1 |
Pfam | PF00155 |
Aminotran_1_2 | Domain | 99 | 420 | 1.4e-51 | 176.6 | Aminotransferase class I and II |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。