Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002668`

染色体: Chr07 坐标: 25958208-25960473 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002668`
名称	SmilChr07G002668
描述	uncharacterized SmilChr07G002668
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	25958208 - 25960473 / `+`

ID 对照

NCBI Gene ID	`LOC130993733`
GeneID	`130993733`
locus_tag	`-`
NCBI Name	`LOC130993733`
原始查询	`SmilChr07G002668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	structural polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:843335]; symbol=AT1G69980; hit=AT1G69980; species=arabidopsis; confidence=medium
产物	structural polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:843335]; symbol=AT1G69980; hit=AT1G69980; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G69980` (AT1G69980) structural polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:843335] identity=41.1; qcov=0.942; evalue=6.41e-33; confidence=medium
Rice	`Os09g0560400` - identity=43.3; qcov=0.702; evalue=6.17e-26; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130993733

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057774756.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057774757.1`
3	Vacuole	液泡	0.40000	`XP_057774758.1`
4	Cell membrane	细胞膜	0.20000	`XP_057774757.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057774757.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:25958407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B42,B43,B89,B95
`Chr7:25958684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B51,C33,C46,C6
`Chr7:25959584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,B58,C78
`Chr7:25959637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:25959701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C42
`Chr7:25959966`	`A`	`AG`	1bp_insertion	frameshift_variant	43	A16,A2,A20,A5,B119,B12,B121,B13,B134,B16,B17,B18,B20,B33,B38,B39,B49,B67,B69,B71,B8,B80,B9,B94,C13,C15,C21,C23,C25,C30,C31,C36,C39,C4,C41,C58,C60,C62,C63,C73,C85,D3,D5
`Chr7:25959970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,C14
`Chr7:25959978`	`AT`	`A`	1bp_deletion	frameshift_variant	55	A11,A14,A16,A23,A24,A3,A7,A8,A9,B100,B110,B111,B112,B115,B127,B128,B13,B130,B131,B132,B15,B19,B23,B26,B27,B3,B31,B35,B40,B53,B56,B60,B64,B69,B77,B88,B94,B96,C15,C16,C19,C26,C31,C33,C34,C37,C4,C64,C66,C80,C81,C83,C84,D2,D8
`Chr7:25960008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr7:25960012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr7:25960259`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B122,C44
`Chr7:25960259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C44

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918774.1
GGATCCGTACTATAATAATCGAAGACCATGATGCGATTAGCATTTAGCAAACACTAGGGGTCAAAAGTAGAATAAGTGAAAATAGTTGGGGCGATTATATAATATATCATAATTGGTAAGAGAGATCTACGAAGCCCCAAGATTTCAACAGAAGAGGCGAAGACAATACACAGGCGAAAATGCTCTACTCCGCCAAACCGCAATTGCTAATTCCTCTTTTCTTCTTGCTATCTTCATTTCTCTTCGGGAATCTTACGCTT...

XM_057918773.1
TAAGAGAGATCTACGAAGCCCCAAGATTTCAACAGAAGAGGCGAAGACAATACACAGGCGAAAATGCTCTACTCCGCCAAACCGCAATTGCTAATTCCTCTTTTCTTCTTGCTATCTTCATTTCTCTTCGGGAATCTTACGCTTGCTTACAATTTAGAATCAATATCAATAAAAGGGAGAACCCTGATGAGTATTAAGGAGACACCAATTGGTGGAAATGTCACCTTTGATTGCTCTCCTTCGGGCCCTTGCATACCATG...

CDS

3 records

下载 CDS FASTA

LOC130993733
ATGCTCTACTCCGCCAAACCGCAATTGCTAATTCCTCTTTTCTTCTTGCTATCTTCATTTCTCTTCGGGAATCTTACGCTTGCTTACAATTTAGAATCAATATCAATAAAAGGGAGAACCCTGATGAGTATTAAGGAGACACCAATTGGTGGAAATGTCACCTTTGATTGCTCTCCTTCGGGCCCTTGCATACCATGCCTTCGCGCTGAAAAGAATGATGAAAAATATCGTTGCGGCGAAACCGGATATCGCATTCGTCT...

Protein

3 records

下载 Protein FASTA

XP_057774756.1
MLYSAKPQLLIPLFFLLSSFLFGNLTLAYNLESISIKGRTLMSIKETPIGGNVTFDCSPSGPCIPCLRAEKNDEKYRCGETGYRIRLKCVPSGSGSKDSKSTKGHKKRSTLEFTELGDNQHDGDLNISSTRQRRLLGDSSKSGPRSYVTYRSCIPAVNEEKLSVLGFEVSLPFFTLSIHICSCTSCREFTYNIIIMKLELLQKKKKRKLIFVAMITFDGERT

XP_057774757.1
MLYSAKPQLLIPLFFLLSSFLFGNLTLAYNLESISIKGRTLMSIKETPIGGNVTFDCSPSGPCIPCLRAEKNDEKYRCGETGYRIRLKCVPSGSGSKDSKSTKGHKKRSTLEFTELGDNQHDGDLNISSTRQRRLLGDSSKSGPRSYVTYRSCIPAVNEEKLSVLGFEALMLGLLVSSGSFIYFRRKRAAVPGGVPVRLPTSSRF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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