当前解析结果
SmilChr07G002684| 统一新 Gene ID | SmilChr07G002684 |
|---|---|
| 名称 | SmilChr07G002684 |
| 描述 | glutathione S-transferase U17-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26248437 - 26249503 / - |
| NCBI Gene ID | LOC130995703 |
|---|---|
| GeneID | 130995703 |
| locus_tag | - |
| NCBI Name | LOC130995703 |
| 原始查询 | SmilChr07G002684 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione S-transferase U17-like |
| 产物 | glutathione S-transferase U17-like |
| Arabidopsis | AT1G59670 (GSTU15)glutathione S-transferase TAU 15 [Source:NCBI gene (formerly Entrezgene);Acc:842257] identity=48.1; qcov=0.947; evalue=2.06e-74; confidence=high |
| Rice | Os10g0530400 (OsGSTU23)- identity=48.4; qcov=0.978; evalue=8.02e-67; confidence=high |
| GO | GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00043 (GST_C); PF02798 (GST_N); PF13409 (GST_N_2); PF13410 (GST_C_2); PF13417 (GST_N_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995703 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057777077.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057777077.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777077.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777077.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777077.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26248563 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C15,C21 |
Chr7:26248563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26248565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,D11 |
Chr7:26248755 |
AAC |
A |
2bp_deletion | frameshift_variant | 1 | B110 |
Chr7:26248755 |
AAC |
A |
2bp_deletion | CDS_variant | 1 | B110 |
Chr7:26248825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr7:26249029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26249038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:26249071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26249080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr7:26249247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26249276 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777077.1PF02798
GST_N 5-78 aa
PF13417
GST_N_3 11-78 aa
PF13409
GST_N_2 14-78 aa
PF00043
GST_C 99-197 aa
PF13410
GST_C_2 128-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777077.1 |
Pfam | PF02798 |
GST_N | Domain | 5 | 78 | 1.5e-15 | 58.0 | Glutathione S-transferase, N-terminal domain |
XP_057777077.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 11 | 78 | 7.2e-13 | 49.4 | Glutathione S-transferase, N-terminal domain |
XP_057777077.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 14 | 78 | 6.2e-12 | 46.7 | Glutathione S-transferase, N-terminal domain |
XP_057777077.1 |
Pfam | PF00043 |
GST_C | Domain | 99 | 197 | 9.4e-07 | 29.7 | Glutathione S-transferase, C-terminal domain |
XP_057777077.1 |
Pfam | PF13410 |
GST_C_2 | Domain | 128 | 191 | 2.5e-06 | 28.2 | Glutathione S-transferase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。