Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002689`

染色体: Chr07 坐标: 26254347-26256261 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002689`
名称	SmilChr07G002689
描述	glutathione S-transferase U17-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	26254347 - 26256261 / `+`

ID 对照

NCBI Gene ID	`LOC130995700`
GeneID	`130995700`
locus_tag	`-`
NCBI Name	`LOC130995700`
原始查询	`SmilChr07G002689`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutathione S-transferase U17-like
产物	glutathione S-transferase U17-like
Arabidopsis	`AT1G10370` (ERD9) Glutathione S-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837576] identity=51.8; qcov=0.987; evalue=4.78e-74; confidence=high
Rice	`Os10g0528400` (OsGSTU3) - identity=44.7; qcov=1.01; evalue=6.97e-65; confidence=medium
GO	GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process)
KEGG	smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3)
InterPro	-
eggNOG	-
NR	GeneID:130995700

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057777073.1`
2	Cytoplasm	细胞质	0.20000	`XP_057777073.1`
3	Nucleus	细胞核	0.00000	`XP_057777073.1`
4	Chromosome	染色体	0.00000	`XP_057777073.1`
5	Centromere	着丝粒	0.00000	`XP_057777073.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:26255613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B86,C17
`Chr7:26255621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,C19,C31
`Chr7:26255626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C37,D11
`Chr7:26255765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B24,B26,B33,B67,C53
`Chr7:26255902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:26256040`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B37
`Chr7:26256040`	`GC`	`G`	1bp_deletion	CDS_variant	1	B37
`Chr7:26256043`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B37
`Chr7:26256043`	`C`	`CT`	1bp_insertion	CDS_variant	1	B37
`Chr7:26256065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:26256070`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	B37
`Chr7:26256070`	`A`	`AGG`	2bp_insertion	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777073.1

230 aa

115

230

GST_N

GST_N_3

GST_N_2

PF02798 GST_N 5-77 aa PF13417 GST_N_3 8-78 aa PF13409 GST_N_2 14-77 aa

XP_057777074.1

223 aa

112

223

GST_N

GST_N_3

GST_N_2

PF02798 GST_N 5-77 aa PF13417 GST_N_3 8-78 aa PF13409 GST_N_2 14-77 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777073.1`	Pfam	`PF02798`	GST_N	Domain	5	77	4.6e-16	59.6	Glutathione S-transferase, N-terminal domain
`XP_057777073.1`	Pfam	`PF13417`	GST_N_3	Domain	8	78	1.4e-15	58.1	Glutathione S-transferase, N-terminal domain
`XP_057777073.1`	Pfam	`PF13409`	GST_N_2	Domain	14	77	7.9e-12	46.3	Glutathione S-transferase, N-terminal domain
`XP_057777074.1`	Pfam	`PF02798`	GST_N	Domain	5	77	5e-16	59.5	Glutathione S-transferase, N-terminal domain
`XP_057777074.1`	Pfam	`PF13417`	GST_N_3	Domain	8	78	1.4e-15	58.1	Glutathione S-transferase, N-terminal domain
`XP_057777074.1`	Pfam	`PF13409`	GST_N_2	Domain	14	77	8.3e-12	46.3	Glutathione S-transferase, N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921090.1
TTTTTTCCATTACTCAGGCAAATGAGGGAGGCTGATGGGGAGGAGGCTAAAATGCTGGTTTTTGAGAAAGTAGTTGAAGCATCTCTGTTGTTGGAGGAGGCATTCATCAACTGCAGTAAAGGCAAAGCTTTCTTTGGTGGAGATAATGTTGGTTACCTTGATATAGCTCTAGGGAGTTTTGTGGGACATTTAAGGGCGATGGAGATGATGAATGCAGCTTATAAAGTCCTCGACGAGACCAAGACTCCTCGTCTGGCCGC...

XM_057921091.1
AATAGAAAAGTCCACAAAAGAAGACTAATTAAAGTAGGTGGTTTGGCATTAAATTATTGGTCCAATAATGCAAGCTTCTTTTTTTGCCCTTTTTTACCCCTTGAGCTGGGATGATGAAAGTTAAGCACTTTGTCCATAGCGAAAGAGATTTGTTTTGATCTTGATTACAACTGTAGCAGATAATTTTCACATCATCCATGGCAACAAGTTCTGTAAAGCTTTTAGGAGCAAGGCAGAGCCCATTTGTGAACAGGGTTGTG...

CDS

2 records

下载 CDS FASTA

LOC130995700
ATGGCAACAAGTTCTGTAAAGCTTTTAGGAGCAAGGCAGAGCCCATTTGTGAACAGGGTTGTGATGGCGCTTTTGATGAAATCCATCAATTATGAGTTAGTAGAAATGAATCCATACCTAAAACCTGAGCTTCTTATCAAAACCAATCCAGTTCACAAGAAAATCCCAGTGCTTCTTCATGGTGATAGGCCAATATGTGAGTCTCTTATCATTGTTCAATATATTGATGAAGCATGGACTAATGGCCCTTCCATCCTTCC...

Protein

2 records

下载 Protein FASTA

XP_057777073.1
MATSSVKLLGARQSPFVNRVVMALLMKSINYELVEMNPYLKPELLIKTNPVHKKIPVLLHGDRPICESLIIVQYIDEAWTNGPSILPTDPYDCAIARFWAAFFDDKFVPLLWQIREAEGEDAKELVLEKIFEAFVLLEEAFINCSKGKAFFGGDSVGYLDIVVGSFVVYIRVAEMMNGIKILDETKTPRLVGWAERLYSDSSLKDVLMDPQLLLEQLKRFQAMMSEAASD

XP_057777074.1
MATSSVKLLGARQSPFVNRVVMALLMKSINYELVEMNPYLKPELLIKTNPVHKKIPVLLHGDRPICESLIIVQYIDEAWTNGPSILPTDPYDCAIARFWAAFFDDKIREAEGEDAKELVLEKIFEAFVLLEEAFINCSKGKAFFGGDSVGYLDIVVGSFVVYIRVAEMMNGIKILDETKTPRLVGWAERLYSDSSLKDVLMDPQLLLEQLKRFQAMMSEAASD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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