当前解析结果
SmilChr07G002693| 统一新 Gene ID | SmilChr07G002693 |
|---|---|
| 名称 | SmilChr07G002693 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26264626 - 26267021 / - |
| NCBI Gene ID | LOC130995695 |
|---|---|
| GeneID | 130995695 |
| locus_tag | - |
| NCBI Name | LOC130995695 |
| 原始查询 | SmilChr07G002693 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 |
| Arabidopsis | AT1G69910 (AT1G69910)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843327] identity=59.1; qcov=0.995; evalue=0; confidence=high |
| Rice | Os01g0136800 (OsWAK2)- identity=35; qcov=1; evalue=1.13e-84; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14380 (WAK_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995695 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057777066.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057777066.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057777066.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777066.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777066.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26264736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr7:26264909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B46 |
Chr7:26265073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B70,C40,C55 |
Chr7:26265076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B86,C17 |
Chr7:26265186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,C49,C50,C58 |
Chr7:26265191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:26265451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C18 |
Chr7:26265638 |
TCG |
T |
2bp_deletion | frameshift_variant | 13 | B110,B114,B117,B14,B21,B23,B29,B41,B61,B72,C23,C5,C51 |
Chr7:26265642 |
A |
ATG |
2bp_insertion | frameshift_variant | 12 | B110,B114,B117,B14,B21,B23,B29,B41,B61,C23,C5,C51 |
Chr7:26265771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,A3,B51,C51,D2 |
Chr7:26265801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B109,B51,C51 |
Chr7:26265804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B109,B51,C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777066.1PF14380
WAK_assoc 181-231 aa
PF00069
Pkinase 313-595 aa
PF07714
PK_Tyr_Ser-Thr 314-597 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777066.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 181 | 231 | 5.4e-07 | 30.9 | Wall-associated receptor kinase C-terminal |
XP_057777066.1 |
Pfam | PF00069 |
Pkinase | Domain | 313 | 595 | 3.2e-41 | 142.2 | Protein kinase domain |
XP_057777066.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 314 | 597 | 1.4e-39 | 136.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。