Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002695`

染色体: Chr07 坐标: 26298993-26300995 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002695`
名称	SmilChr07G002695
描述	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	26298993 - 26300995 / `-`

ID 对照

NCBI Gene ID	`LOC130995706`
GeneID	`130995706`
locus_tag	`-`
NCBI Name	`LOC130995706`
原始查询	`SmilChr07G002695`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g59720%2C chloroplastic/mitochondrial-like
Arabidopsis	`AT1G59720` (CRR28) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842263] identity=56.5; qcov=1; evalue=0; confidence=high
Rice	`Os07g0191500` - identity=53.1; qcov=0.845; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:130995706

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057777081.1`
2	Nucleus	细胞核	0.00000	`XP_057777081.1`
3	Chromosome	染色体	0.00000	`XP_057777081.1`
4	Centromere	着丝粒	0.00000	`XP_057777081.1`
5	Chromatin	染色质	0.00000	`XP_057777081.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:26299162`	`ACT`	`A`	2bp_deletion	frameshift_variant	6	B1,B14,B73,C1,C77,C83
`Chr7:26299208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr7:26299238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B99
`Chr7:26299241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B5,B77,B98,D4
`Chr7:26299261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr7:26299292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,D11
`Chr7:26299408`	`ATC`	`A`	2bp_deletion	frameshift_variant	87	A1,A13,A2,A25,A4,A5,A7,B103,B104,B117,B120,B123,B125,B127,B129,B130,B135,B137,B138,B139,B18,B19,B24,B25,B29,B30,B31,B32,B34,B37,B4,B41,B42,B43,B48,B5,B52,B54,B57,B58,B62,B68,B71,B74,B75,B77,B78,B8,B80,B84,B85,B86,B87,B89,B9,B95,B98,C11,C13,C17,C18,C20,C22,C24,C27,C36,C38,C48,C50,C58,C61,C62,C63,C65,C69,C72,C74,C75,C79,C8,C80,C85,C86,C87,D11,D4,D6
`Chr7:26299487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,B27,B44,D7
`Chr7:26299505`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,B44,D7
`Chr7:26299572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,C67
`Chr7:26299581`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B43
`Chr7:26299581`	`A`	`AT`	1bp_insertion	CDS_variant	1	B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777081.1

601 aa

300

601

PPR

PPR_3

PPR

E_motif

Eplus_motif

DYW_deaminase

PF01535 PPR 86-101 aa PF13812 PPR_3 149-197 aa PF01535 PPR 160-185 aa PF01535 PPR 188-214 aa PF01535 PPR 263-289 aa PF01535 PPR 292-319 aa PF01535 PPR 365-389 aa PF20431 E_motif 415-471 aa PF20430 Eplus_motif 476-497 aa PF14432 DYW_deaminase 507-601 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777081.1`	Pfam	`PF01535`	PPR	Repeat	86	101	7.6e-34	114.3	PPR repeat
`XP_057777081.1`	Pfam	`PF13812`	PPR_3	Repeat	149	197	2.5e-17	63.4	Pentatricopeptide repeat domain
`XP_057777081.1`	Pfam	`PF01535`	PPR	Repeat	160	185	7.6e-34	114.3	PPR repeat
`XP_057777081.1`	Pfam	`PF01535`	PPR	Repeat	188	214	7.6e-34	114.3	PPR repeat
`XP_057777081.1`	Pfam	`PF01535`	PPR	Repeat	263	289	7.6e-34	114.3	PPR repeat
`XP_057777081.1`	Pfam	`PF01535`	PPR	Repeat	292	319	7.6e-34	114.3	PPR repeat
`XP_057777081.1`	Pfam	`PF01535`	PPR	Repeat	365	389	7.6e-34	114.3	PPR repeat
`XP_057777081.1`	Pfam	`PF20431`	E_motif	Repeat	415	471	9.3e-13	48.9	E motif
`XP_057777081.1`	Pfam	`PF20430`	Eplus_motif	Motif	476	497	2e-08	34.6	E+ motif
`XP_057777081.1`	Pfam	`PF14432`	DYW_deaminase	Domain	507	601	2.8e-30	104.7	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921098.1
ATTATCGCATTTTTTCTAATTTTTGCCCAAAACAAGTTGGGTCTACGACTACAAGATTCTGATAGTTAATAGTCGTTGGAATAGCAGTAATTCGAGGGAAATGAAGTTGGAACTATGGCTATGCTTTTAGCGGCGGAGCTGTCCACCGCCCCGCGCCACCGCCATGACCACCGAGTCGTCCACATTTTAACGCAATCGGCCACCATTCCTCTCCCTCACCTCAAACAAATACACGCCAAAACTCCGCAGCTCCACCAGAG...

CDS

1 records

下载 CDS FASTA

LOC130995706
ATGGCTATGCTTTTAGCGGCGGAGCTGTCCACCGCCCCGCGCCACCGCCATGACCACCGAGTCGTCCACATTTTAACGCAATCGGCCACCATTCCTCTCCCTCACCTCAAACAAATACACGCCAAAACTCCGCAGCTCCACCAGAGTCCCGAATCTGTCCATGTCTACAGCAGGCTGCTGCACTTTTCCGCCTTACAAGACCTAATCTACACACTGCAACTCTTCCACAACATTCCAAACCCTAACACGTTCATCTACAA...

Protein

1 records

下载 Protein FASTA

XP_057777081.1
MAMLLAAELSTAPRHRHDHRVVHILTQSATIPLPHLKQIHAKIXPQLHQSPESVHVYSRLLHFSALQDLIYTLQLFHNIPNPNTFIYNTLIRAYAHSKLHKNRAFSVFQELLEQETLLPDKHTFPFVLKACAHSFDLIEGKQTHAQVFKRGFASDVYVSNSLIHFYASCGLPENASKVFDKMPERSLVSWNAIIDALVLAGEFYKALGMFVEMMASFEPDGYTVQSVINACAGLGALSMGMWLHAYLLKKCGIDPKFDIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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