Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002700`

染色体: Chr07 坐标: 26341862-26351511 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002700`
名称	SmilChr07G002700
描述	AMP deaminase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	26341862 - 26351511 / `-`

ID 对照

NCBI Gene ID	`LOC130995712`
GeneID	`130995712`
locus_tag	`-`
NCBI Name	`LOC130995712`
原始查询	`SmilChr07G002700`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AMP deaminase-like
产物	AMP deaminase-like
Arabidopsis	`AT2G38280` (FAC1) AMP deaminase, putative / myoadenylate deaminase [Source:NCBI gene (formerly Entrezgene);Acc:818408] identity=61.3; qcov=1; evalue=0; confidence=high
Rice	`Os07g0693500` (AMPD) - identity=65.3; qcov=0.826; evalue=0; confidence=high
GO	GO:0003876 (AMP deaminase activity); GO:0005829 (cytosol); GO:0032264 (IMP salvage); GO:0046033 (AMP metabolic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil04820 (Cytoskeleton in muscle cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00962 (A_deaminase); PF19326 (AMP_deaminase)
InterPro	-
eggNOG	-
NR	GeneID:130995712

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057777087.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057777087.1`
3	Lipid droplet	脂滴	0.20000	`XP_057777087.1`
4	Nucleus	细胞核	0.00000	`XP_057777087.1`
5	Chromosome	染色体	0.00000	`XP_057777087.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:26343113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B99
`Chr7:26345399`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B98
`Chr7:26345399`	`TC`	`T`	1bp_deletion	CDS_variant	1	B98
`Chr7:26345401`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B98
`Chr7:26345401`	`TC`	`T`	1bp_deletion	CDS_variant	1	B98
`Chr7:26347127`	`G`	`GT`	1bp_insertion	frameshift_variant	3	A4,C11,C69
`Chr7:26347127`	`G`	`GT`	1bp_insertion	CDS_variant	3	A4,C11,C69
`Chr7:26348981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:26349047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,B46
`Chr7:26349241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr7:26349426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,C32,C68
`Chr7:26350945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C13,C28,C73,C75,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777087.1

883 aa

442

883

AMP_deaminase

A_deaminase

PF19326 AMP_deaminase 288-870 aa PF00962 A_deaminase 698-828 aa

XP_057777088.1

873 aa

436

873

AMP_deaminase

A_deaminase

PF19326 AMP_deaminase 278-860 aa PF00962 A_deaminase 688-818 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777087.1`	Pfam	`PF19326`	AMP_deaminase	Domain	288	870	6.8e-293	973.6	AMP deaminase
`XP_057777087.1`	Pfam	`PF00962`	A_deaminase	Domain	698	828	1.4e-09	38.2	Adenosine deaminase
`XP_057777088.1`	Pfam	`PF19326`	AMP_deaminase	Domain	278	860	6.8e-293	973.6	AMP deaminase
`XP_057777088.1`	Pfam	`PF00962`	A_deaminase	Domain	688	818	1.4e-09	38.2	Adenosine deaminase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921104.1
GGGTTTCAACAATTTACTTTTCGCCATTTCACAAAAATATTTAGGCTGGAGATTATGTATAAGCTACTCAAAAACAGACAATTCGCAAGAGTGAAGAGAAGAACTGCTTCTTCTTCTTCTTCTTCTTCCTTTTTTTTTGTTTTTCATTTTGGGTGTGCGTGTGCGAGGAGTAGAACTGTATTTTTATTTTTATTTTACTTAGTAGAAATGTATTTTAACAACACAGAAATCTAATCTGAAACGGGATTTAATTTAAATAC...

XM_057921105.1
ATTCGCAAGAGTGAAGAGAAGAACTGCTTCTTCTTCTTCTTCTTCTTCCTTTTTTTTTGTTTTTCATTTTGGGTGTGCGTGTGCGAGGAGTAGAACTGTATTTTTATTTTTATTTTACTTAGTAGAAATGTATTTTAACAACACAGAAATCTAATCTGAAACGGGATTTAATTTAAATACTTTCAATTCAAGGAGTCGACTAAATTACCCTACTCTCCTTCATCACTCTACTTTCTGTGTATGATAATACAGCTGCATTC...

CDS

2 records

下载 CDS FASTA

LOC130995712
ATGTTTTCGCCACCGCCACCGTTTTCGCCAGTTTCGTCCGCGCAGCTGGCGGTGGCGGCGTTGTTCGGCGCCTCCGTCATGGCTATTTCCGCGTTCTACATCCATAAACGCAGCGTCGATCAAGTCCTCGATCGTCTCATCAACATCCGCCACCGCCGCCACCATCACCTACTATCTGACGATGAACATTGTGAATTTTCGGATTTTGATGAGAACTCGGAGACTGATAGGAACGTGATTTTGTGGACAAGTAGAAATAA...

Protein

2 records

下载 Protein FASTA

XP_057777087.1
MFSPPPPFSPVSSAQLAVAALFGASVMAISAFYIHKRSVDQVLDRLINIRHRRHHHLLSDDEHCEFSDFDENSETDRNVILWTSRNKVLSSSEDHIKDGESDAVRDYRVSSSMPNYSILKNEHGGEEAGTAVYPTLPNSLDKIDSISSNLPPVRTGQRDGEEQYVNHSGTSMRVGSVGRLVTPGSACGYAFERTGDSDDEGTELEVEEDVLSYQNDINLTTQNQQILPAQASNGIYIHVQDSEAIVTEAKPDTDHADSKV...

XP_057777088.1
MFSPPPPFSPVSSAQLAVAALFGASVMAISAFYIHKRSVDQVLDRLINIRHRRHHHLLSDDEHCEFSDFDENSETDRNVILWTSRNKVLSSSEDHIKDGESDAVRDYRVSSSMPNYSILKNEHGGEEAGTAVYPTLPNSLDKIDSISSNLPPVRTGQRDGEEQYVNHSGTSMRVGSVGRLVTPGSACGYAFERTGDSDDEGTELEVEEDVLSYQNILPAQASNGIYIHVQDSEAIVTEAKPDTDHADSKVEITLANDPVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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