Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002703`

染色体: Chr07 坐标: 26402984-26406766 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002703`
名称	SmilChr07G002703
描述	protein PTST homolog 2, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	26402984 - 26406766 / `+`

ID 对照

NCBI Gene ID	`LOC130995714`
GeneID	`130995714`
locus_tag	`-`
NCBI Name	`LOC130995714`
原始查询	`SmilChr07G002703`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PTST homolog 2, chloroplastic-like
产物	protein PTST homolog 2%2C chloroplastic-like
Arabidopsis	`AT1G27070` (AT1G27070) 5'-AMP-activated protein kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839596] identity=40.4; qcov=1.06; evalue=3.21e-97; confidence=medium
Rice	`Os03g0686900` (FLO6) - identity=37.8; qcov=1.06; evalue=5.12e-75; confidence=medium
GO	-
KEGG	-
Pfam	PF02922 (CBM_48); PF16561 (AMPK1_CBM)
InterPro	-
eggNOG	-
NR	GeneID:130995714

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777091.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057777092.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057777091.1`
4	Nucleus	细胞核	0.20000	`XP_057777092.1`
5	Nucleus membrane	核膜	0.20000	`XP_057777092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:26403232`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:26403303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr7:26403326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:26403358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr7:26403511`	`G`	`GT`	1bp_insertion	frameshift_variant	3	B12,B20,D5
`Chr7:26403511`	`G`	`GT`	1bp_insertion	CDS_variant	3	B12,B20,D5
`Chr7:26403988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:26404025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr7:26404307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B44,C46
`Chr7:26404660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C71
`Chr7:26404707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B70,C40,C55
`Chr7:26405119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B44,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777091.1

505 aa

252

505

CBM_48

AMPK1_CBM

PF02922 CBM_48 427-487 aa PF16561 AMPK1_CBM 428-502 aa

XP_057777092.1

435 aa

218

435

CBM_48

AMPK1_CBM

PF02922 CBM_48 357-417 aa PF16561 AMPK1_CBM 358-432 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777091.1`	Pfam	`PF02922`	CBM_48	Domain	427	487	4.8e-05	24.3	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
`XP_057777091.1`	Pfam	`PF16561`	AMPK1_CBM	Family	428	502	2.8e-19	69.8	Glycogen recognition site of AMP-activated protein kinase
`XP_057777092.1`	Pfam	`PF02922`	CBM_48	Domain	357	417	4e-05	24.6	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
`XP_057777092.1`	Pfam	`PF16561`	AMPK1_CBM	Family	358	432	2.2e-19	70.2	Glycogen recognition site of AMP-activated protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921108.1
GTTCTGTATTTTTTTCTCATCAAAGAAATACGCTAAACAAGAAGAAAACATATTTTTAGTGTGTCAACCAATCTCCAATTATGACTACAGGTTAGTGATTCTAGTCAAAAAATATTTTCAGATTAGAATTTATGACTACGTAGTAGTGATTCTAGTAAAAAATATTGTGGGATTAGAATTTACAGTAATTACGTGGATGAGTTGTTACATGTCATCCTTCATAGCTCACACCCAAATGCTCCGCGTCTCTTTGTTGAAGG...

XM_057921109.1
GTTCTGTATTTTTTTCTCATCAAAGAAATACGCTAAACAAGAAGAAAACATATTTTTAGTGTGTCAACCAATCTCCAATTATGACTACAGGCCAGTGTCGTCCCCGCGTGGAAGTTTAAGTGTGAGAATCTTAGTTTCCGGTTGAGTGAAGAGAGGCGGGCGCTCCAATTAGGGATAAATCTCGATAAGTCTTTGCGTTGCGGATGCCATAAGGACGTGGAGTTGGAGGCGGAGATAATGAATTTCATGGTGAAGTCGGA...

CDS

2 records

下载 CDS FASTA

LOC130995714
ATGAGTTGTTACATGTCATCCTTCATAGCTCACACCCAAATGCTCCGCGTCTCTTTGTTGAAGGCCAGTGTCGTCCCCGCGTGGAAGTTTAAGTGTGAGAATCTTAGTTTCCGGTTGAGTGAAGAGAGGCGGGCGCTCCAATTAGGGATAAATCTCGATAAGTCTTTGCGTTGCGGATGCCATAAGGACGTGGAGTTGGAGGCGGAGATAATGAATTTCATGGTGAAGTCGGAGAAACCATCGATGTTCCCAACGAAGGA...

LOC130995714
ATGAATTTCATGGTGAAGTCGGAGAAACCATCGATGTTCCCAACGAAGGAGGAGTTGGTGAGAGCTGGAAGATTTGATTTGGTGATAGCTATAAAGAAGAGAGGCGGCTGGTATTCTCTTGGTTGGGACTTCGAAAATGTGGGAAACGATGCGGAGGAAATAACGGATTCTGATATTGCGGACTTCCAGAGGAGAATTGAGAGTTGTCGTTCCTCGAGTTTCTCTCATGAGGGTATCGTGAGCTCTAGTCCTCAAAATTT...

Protein

2 records

下载 Protein FASTA

XP_057777091.1
MSCYMSSFIAHTQMLRVSLLKASVVPAWKFKCENLSFRLSEERRALQLGINLDKSLRCGCHKDVELEAEIMNFMVKSEKPSMFPTKEELVRAGRFDLVIAIKKRGGWYSLGWDFENVGNDAEEITDSDIADFQRRIESCRSSSFSHEGIVSSSPQNLDSLQLAASSSLDSCSSQQLAADEDSGIDGILSRLEKQRNSDFSEKLGRNGYEAQSKSIDEGDDRHSDTPLGFGGTDFEENSRLMPSYHPNGTLDSPCDNITHS...

XP_057777092.1
MNFMVKSEKPSMFPTKEELVRAGRFDLVIAIKKRGGWYSLGWDFENVGNDAEEITDSDIADFQRRIESCRSSSFSHEGIVSSSPQNLDSLQLAASSSLDSCSSQQLAADEDSGIDGILSRLEKQRNSDFSEKLGRNGYEAQSKSIDEGDDRHSDTPLGFGGTDFEENSRLMPSYHPNGTLDSPCDNITHSTEPETWRSWMNRRAGFSLAEFEAAEISLKKTPVDTNKESYHDGITVTTKEYAEDLDKEIINYNEIRTRLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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