当前解析结果
SmilChr07G002723| 统一新 Gene ID | SmilChr07G002723 |
|---|---|
| 名称 | SmilChr07G002723 |
| 描述 | uncharacterized SmilChr07G002723 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26719902 - 26721853 / + |
| NCBI Gene ID | LOC130995734 |
|---|---|
| GeneID | 130995734 |
| locus_tag | - |
| NCBI Name | LOC130995734 |
| 原始查询 | SmilChr07G002723 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DGCR14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819970]; symbol=AT3G07790; hit=AT3G07790; species=arabidopsis; confidence=high |
| 产物 | DGCR14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819970]; symbol=AT3G07790; hit=AT3G07790; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G07790 (AT3G07790)DGCR14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819970] identity=63; qcov=0.992; evalue=0; confidence=high |
| Rice | Os06g0502900- identity=57.2; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | - |
| Pfam | PF09751 (Es2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995734 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777116.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057777116.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777116.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777116.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777116.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26720113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:26720125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,A18 |
Chr7:26720368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B73 |
Chr7:26720394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:26720586 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr7:26720758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B99 |
Chr7:26720806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B107,C19,C82 |
Chr7:26720864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B70,C40,C55 |
Chr7:26720881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C26,C71 |
Chr7:26721221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:26721364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:26721388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777116.1PF09751
Es2 47-458 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777116.1 |
Pfam | PF09751 |
Es2 | Family | 47 | 458 | 2.9e-101 | 341.0 | Nuclear protein Es2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。