Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002732`

染色体: Chr07 坐标: 26768247-26773761 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002732`
名称	SmilChr07G002732
描述	protein IQ-DOMAIN 28-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	26768247 - 26773761 / `+`

ID 对照

NCBI Gene ID	`LOC130995743`
GeneID	`130995743`
locus_tag	`-`
NCBI Name	`LOC130995743`
原始查询	`SmilChr07G002732`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-DOMAIN 28-like
产物	protein IQ-DOMAIN 28-like
Arabidopsis	`AT2G02790` (IQD29) IQ-domain 29 [Source:NCBI gene (formerly Entrezgene);Acc:814808] identity=31.9; qcov=0.988; evalue=3.07e-56; confidence=low
Rice	`Os05g0535900` - identity=32.4; qcov=1.09; evalue=1.11e-52; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:130995743

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057777127.1`
2	Nucleus	细胞核	0.40000	`XP_057777127.1`
3	Cell membrane	细胞膜	0.40000	`XP_057777127.1`
4	Nucleus membrane	核膜	0.20000	`XP_057777129.1`
5	Cytosol	细胞质基质	0.20000	`XP_057777129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:26769595`	`AG`	`A`	1bp_deletion	frameshift_variant	3	A4,C11,C69
`Chr7:26769595`	`AG`	`A`	1bp_deletion	CDS_variant	3	A4,C11,C69
`Chr7:26770050`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,C77,C83
`Chr7:26770067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:26770132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:26770165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B107,C19,C82
`Chr7:26770186`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B48,B66,D5
`Chr7:26770214`	`TA`	`T`	1bp_deletion	frameshift_variant	19	A14,A15,B1,B115,B120,B2,B34,B38,B39,B4,B45,B46,B63,B98,C28,C32,C49,C68,C8
`Chr7:26770234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:26770235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:26770640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:26770646`	`G`	`GT`	1bp_insertion	frameshift_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777127.1

531 aa

266

531

DUF4005

PF00612 IQ 115-134 aa PF00612 IQ 137-154 aa PF00612 IQ 163-179 aa PF13178 DUF4005 418-503 aa

XP_057777128.1

531 aa

266

531

DUF4005

PF00612 IQ 115-134 aa PF00612 IQ 137-154 aa PF00612 IQ 163-179 aa PF13178 DUF4005 418-503 aa

XP_057777129.1

511 aa

256

511

DUF4005

PF00612 IQ 95-114 aa PF00612 IQ 117-134 aa PF00612 IQ 143-159 aa PF13178 DUF4005 398-483 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777127.1`	Pfam	`PF00612`	IQ	Motif	115	134	3.2e-12	45.8	IQ calmodulin-binding motif
`XP_057777127.1`	Pfam	`PF00612`	IQ	Motif	137	154	3.2e-12	45.8	IQ calmodulin-binding motif
`XP_057777127.1`	Pfam	`PF00612`	IQ	Motif	163	179	3.2e-12	45.8	IQ calmodulin-binding motif
`XP_057777127.1`	Pfam	`PF13178`	DUF4005	Family	418	503	2.8e-08	35.0	Protein of unknown function (DUF4005)
`XP_057777128.1`	Pfam	`PF00612`	IQ	Motif	115	134	3.2e-12	45.8	IQ calmodulin-binding motif
`XP_057777128.1`	Pfam	`PF00612`	IQ	Motif	137	154	3.2e-12	45.8	IQ calmodulin-binding motif
`XP_057777128.1`	Pfam	`PF00612`	IQ	Motif	163	179	3.2e-12	45.8	IQ calmodulin-binding motif
`XP_057777128.1`	Pfam	`PF13178`	DUF4005	Family	418	503	2.8e-08	35.0	Protein of unknown function (DUF4005)
`XP_057777129.1`	Pfam	`PF00612`	IQ	Motif	95	114	2.8e-12	46.0	IQ calmodulin-binding motif
`XP_057777129.1`	Pfam	`PF00612`	IQ	Motif	117	134	2.8e-12	46.0	IQ calmodulin-binding motif
`XP_057777129.1`	Pfam	`PF00612`	IQ	Motif	143	159	2.8e-12	46.0	IQ calmodulin-binding motif
`XP_057777129.1`	Pfam	`PF13178`	DUF4005	Family	398	483	3e-08	34.9	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009092260.1
GAATTTCAAATGGAGTTTTAGAATTTAAAGCACAACCGAATCAGTCCCCCTGCCGCCTGTCTCCCTGCACTGCACCGCACTGCTAATTTCGATAACCCGAAATAAAGCATGAAATTTTAGATAAAGAAATAAATAATTAAGTTAATGTTATTGCAGCAGCTGTCTTTTTCTATTCAGAGTTCATTCAGCCCACATTACAGATTTGCAGTGCTGGTAACGAAATGCAGAACTTTTATACACTTCACATGATTATGTGTAGG...

XR_009092261.1
GAATTTCAAATGGAGTTTTAGAATTTAAAGCACAACCGAATCAGTCCCCCTGCCGCCTGTCTCCCTGCACTGCACCGCACTGCTAATTTCGATAACCCGAAATAAAGCATGAAATTTTAGATAAAGAAATAAATAATTAAGTTAATGTTATTGCAGCAGCTGTCTTTTTCTATTCAGAGTTCATTCAGCCCACATTACAGATTTGCAGTGCTGGTAACGAAATGCAGAACTTTTATACACTTCACATGATTATGTGTAGG...

CDS

3 records

下载 CDS FASTA

LOC130995743
ATGGAAGAATCTTCTTCCTTATATTTCTCTAGATCTGCAAGTGAGAAACCAGCTCAAGTTTCTTCGAAGGAGCCCATATCCACTTCAATAGTTGATACACCATTCATTTCAGGCCCTGTTTCTGGTACTGTTAGTGGTAGAATAGAAAACTCAAGCTTTGAAAAGGGAGAAGCTACAATACTGGCAAGTGAGGGGCAAGTGTCCTCTCTCTTGAATAAAAAAAAGGAAGATAAGCCGTCAGATATTGGGATTCTAAATGA...

LOC130995743
ATGGGAAAGTCTCCAGGAAAATGGATCAAGGGCATTCTTTTTGGTAGAAAAGGATCCAAGTCTAGTCCGTCGACTGGAAGAGAACTTTCTAGATCTGCAAGTGAGAAACCAGCTCAAGTTTCTTCGAAGGAGCCCATATCCACTTCAATAGTTGATACACCATTCATTTCAGGCCCTGTTTCTGGTACTGTTAGTGGTAGAATAGAAAACTCAAGCTTTGAAAAGGGAGAAGCTACAATACTGGCAAGTGAGGGGCAAGT...

Protein

3 records

下载 Protein FASTA

XP_057777127.1
MGKSPGKWIKGILFGRKGSKSSPSTGRELSRSASEKPAQVSSKEPISTSIVDTPFISGPVSGTVSGRIENSSFEKGEATILASEGQVSSLLNKKKEDKPSDIGILNDTGKITLEQAAIIVQAFFRGCQARNEFQILKGAIRLQAAVRGHLVRRQAVGTLFCMKGIVRFQAITRGYMVRQASAGNGHCRKQSPLVKDVSNQDSCEIKYSRSRTLSKNAFIYELLASSRAAMPLRLEYSPGDSNSAWSWLHRWSTSQSWAPN...

XP_057777128.1
MGKSPGKWIKGILFGRKGSKSSPSTGRELSRSASEKPAQVSSKEPISTSIVDTPFISGPVSGTVSGRIENSSFEKGEATILASEGQVSSLLNKKKEDKPSDIGILNDTGKITLEQAAIIVQAFFRGCQARNEFQILKGAIRLQAAVRGHLVRRQAVGTLFCMKGIVRFQAITRGYMVRQASAGNGHCRKQSPLVKDVSNQDSCEIKYSRSRTLSKNAFIYELLASSRAAMPLRLEYSPGDSNSAWSWLHRWSTSQSWAPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器