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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002740

染色体: Chr07 坐标: 26897429-26902536 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002740
名称SmilChr07G002740
描述transcription factor MYB124
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向26897429 - 26902536 / -

ID 对照

NCBI Gene IDLOC130995749
GeneID130995749
locus_tag-
NCBI NameLOC130995749
原始查询SmilChr07G002740

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述transcription factor MYB124
产物transcription factor MYB124
ArabidopsisAT1G14350 (FLP)
Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837997]
identity=55.3; qcov=0.998; evalue=7.95e-167; confidence=high
RiceOs07g0627300 (R2R3-MYB)
-
identity=46.8; qcov=0.678; evalue=1.91e-85; confidence=high
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
PfamPF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro-
eggNOG-
NRGeneID:130995749

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057777134.1
2 Chromosome 染色体 0.00000 XP_057777134.1
3 Centromere 着丝粒 0.00000 XP_057777134.1
4 Chromatin 染色质 0.00000 XP_057777134.1
5 Telomere 端粒 0.00000 XP_057777134.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:26898049 G A EMS_canonical_SNV CDS_variant 2 B108,B112
Chr7:26898090 G GT 1bp_insertion frameshift_variant 6 B106,B11,B120,B16,C5,C74
Chr7:26898850 G A EMS_canonical_SNV CDS_variant 1 A3
Chr7:26899099 G A EMS_canonical_SNV CDS_variant 2 C65,C8
Chr7:26899370 C T EMS_canonical_SNV CDS_variant 4 B126,B135,C16,C33
Chr7:26899486 G A EMS_canonical_SNV CDS_variant 4 B1,B2,B75,C1
Chr7:26900500 C T EMS_canonical_SNV CDS_variant 5 B126,B135,C16,C33,C46
Chr7:26900741 G A EMS_canonical_SNV CDS_variant 3 B115,B124,C16
Chr7:26901627 C T EMS_canonical_SNV CDS_variant 1 B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777134.1
460 aa
N
1
230
460
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 26-70 aa PF13921 Myb_DNA-bind_6 27-87 aa PF00249 Myb_DNA-binding 76-119 aa PF13921 Myb_DNA-bind_6 79-128 aa
XP_057777135.1
460 aa
N
1
230
460
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 26-70 aa PF13921 Myb_DNA-bind_6 27-87 aa PF00249 Myb_DNA-binding 76-119 aa PF13921 Myb_DNA-bind_6 79-128 aa
XP_057777136.1
460 aa
N
1
230
460
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 26-70 aa PF13921 Myb_DNA-bind_6 27-87 aa PF00249 Myb_DNA-binding 76-119 aa PF13921 Myb_DNA-bind_6 79-128 aa
XP_057777137.1
460 aa
N
1
230
460
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 26-70 aa PF13921 Myb_DNA-bind_6 27-87 aa PF00249 Myb_DNA-binding 76-119 aa PF13921 Myb_DNA-bind_6 79-128 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057777134.1 Pfam PF00249 Myb_DNA-binding Domain 26 70 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777134.1 Pfam PF13921 Myb_DNA-bind_6 Domain 27 87 2e-22 79.9 Myb-like DNA-binding domain
XP_057777134.1 Pfam PF00249 Myb_DNA-binding Domain 76 119 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777134.1 Pfam PF13921 Myb_DNA-bind_6 Domain 79 128 2e-22 79.9 Myb-like DNA-binding domain
XP_057777135.1 Pfam PF00249 Myb_DNA-binding Domain 26 70 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777135.1 Pfam PF13921 Myb_DNA-bind_6 Domain 27 87 2e-22 79.9 Myb-like DNA-binding domain
XP_057777135.1 Pfam PF00249 Myb_DNA-binding Domain 76 119 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777135.1 Pfam PF13921 Myb_DNA-bind_6 Domain 79 128 2e-22 79.9 Myb-like DNA-binding domain
XP_057777136.1 Pfam PF00249 Myb_DNA-binding Domain 26 70 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777136.1 Pfam PF13921 Myb_DNA-bind_6 Domain 27 87 2e-22 79.9 Myb-like DNA-binding domain
XP_057777136.1 Pfam PF00249 Myb_DNA-binding Domain 76 119 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777136.1 Pfam PF13921 Myb_DNA-bind_6 Domain 79 128 2e-22 79.9 Myb-like DNA-binding domain
XP_057777137.1 Pfam PF00249 Myb_DNA-binding Domain 26 70 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777137.1 Pfam PF13921 Myb_DNA-bind_6 Domain 27 87 2e-22 79.9 Myb-like DNA-binding domain
XP_057777137.1 Pfam PF00249 Myb_DNA-binding Domain 76 119 3.7e-30 104.5 Myb-like DNA-binding domain
XP_057777137.1 Pfam PF13921 Myb_DNA-bind_6 Domain 79 128 2e-22 79.9 Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057921152.1
GTGGGGTTAGTCTCATTAATTATAGTCTCATGGATTTCAGCGTTATTTTTATTTACATCTTTCTTTTTTCTTTTTTTCTTTTTTCTTTTTTCAAACTTCACCCTCATACCCGCGCTCAAAAGCAAGAATCCGTTGATTATTTTTTAAATTTATTACACAGAAACAATAAAAATAGAAATGAAGAGCACCCCACATTTCCATCTTTCTCTGTGAGAGAGAGCCTCCCCACTTTTGGACAGCGAGAAAGCAACCCTCATCTT...
XM_057921151.1
AATCCGTTGATTATTTTTTAAATTTATTACACAGAAACAATAAAAATAGAAATGAAGAGCACCCCACATTTCCATCTTTCTCTGTGAGAGAGAGCCTCCCCACTTTTGGACAGCGAGAAAGCAACCCTCATCTTTTTCAACCCCATAAAAAAGCACTATCCCATGTTTTTGTTTTTCCTTTAATTCTTGCTTTCATGTGTGTATAATTCTCGTGGATTGCTAATTCTATACGGTTCTTTTTCAAATCTCGAGGCAGACAG...

CDS

4 records

下载 CDS FASTA
LOC130995749
ATGAAGAAGAAGGTAAATAGTGGCACTGATGCAAATACTGGTGAAGTATCAAAGCAGAAAGAGAGGCATATTGTATCATGGTCTCAAGAGGAGGACGATATTCTGCGGGAGCAAATCCGGCTACATGGGACTGAAAATTGGGCCATTATTGCATCGAAATTTAAGGATAAAACGACTAGGCAATGTCGAAGAAGATGGTTCACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCGCCTGAGGAAGACATGCTCTT...
LOC130995749
ATGAAGAAGAAGGTAAATAGTGGCACTGATGCAAATACTGGTGAAGTATCAAAGCAGAAAGAGAGGCATATTGTATCATGGTCTCAAGAGGAGGACGATATTCTGCGGGAGCAAATCCGGCTACATGGGACTGAAAATTGGGCCATTATTGCATCGAAATTTAAGGATAAAACGACTAGGCAATGTCGAAGAAGATGGTTCACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCGCCTGAGGAAGACATGCTCTT...

Protein

4 records

下载 Protein FASTA
XP_057777134.1
MKKKVNSGTDANTGEVSKQKERHIVSWSQEEDDILREQIRLHGTENWAIIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKHEALAKENSTTTYINLNNKRVIFPNGLSTGGSESAAPLKKMRAYVLNTAESHEEKLAGECGDADHLLRPPFAVLAQNVHSSGTNKNQGTFLKKDDPKVLALMQQAELLSSLAIKVNSEKTDQSLESAWTALQDF...
XP_057777135.1
MKKKVNSGTDANTGEVSKQKERHIVSWSQEEDDILREQIRLHGTENWAIIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKHEALAKENSTTTYINLNNKRVIFPNGLSTGGSESAAPLKKMRAYVLNTAESHEEKLAGECGDADHLLRPPFAVLAQNVHSSGTNKNQGTFLKKDDPKVLALMQQAELLSSLAIKVNSEKTDQSLESAWTALQDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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