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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002758

染色体: Chr07 坐标: 27398925-27404478 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002758
名称SmilChr07G002758
描述PH, RCC1 and FYVE domains-containing protein 1
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向27398925 - 27404478 / -

ID 对照

NCBI Gene IDLOC130995768
GeneID130995768
locus_tag-
NCBI NameLOC130995768
原始查询SmilChr07G002758

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述PH, RCC1 and FYVE domains-containing protein 1
产物PH%2C RCC1 and FYVE domains-containing protein 1
ArabidopsisAT1G69710 (AT1G69710)
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843307]
identity=51; qcov=1.02; evalue=0; confidence=high
RiceOs05g0384800
-
identity=51.4; qcov=1.05; evalue=0; confidence=high
GOGO:0046872 (metal ion binding)
KEGG-
PfamPF00415 (RCC1); PF01363 (FYVE); PF08381 (BRX); PF13540 (RCC1_2); PF13713 (BRX_N); PF25390 (WD40_RLD)
InterPro-
eggNOG-
NRGeneID:130995768

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057777162.1
2 Cytoplasm 细胞质 0.20000 XP_057777162.1
3 Cytosol 细胞质基质 0.20000 XP_057777162.1
4 Nucleus 细胞核 0.00000 XP_057777162.1
5 Chromosome 染色体 0.00000 XP_057777162.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:27399144 G A EMS_canonical_SNV CDS_variant 4 B108,B119,B122,B81
Chr7:27399628 C T EMS_canonical_SNV CDS_variant 4 B121,B129,B18,D10
Chr7:27399629 G A EMS_canonical_SNV CDS_variant 3 B14,C77,C83
Chr7:27400525 C T EMS_canonical_SNV CDS_variant 2 B131,C2
Chr7:27400724 C T EMS_canonical_SNV CDS_variant 3 B14,C77,C83
Chr7:27401539 G A EMS_canonical_SNV CDS_variant 2 C64,C83
Chr7:27401865 C T EMS_canonical_SNV CDS_variant 3 B14,C77,C83
Chr7:27401898 C T EMS_canonical_SNV CDS_variant 1 C1
Chr7:27401943 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:27402222 G A EMS_canonical_SNV CDS_variant 2 A3,B112
Chr7:27403094 G A EMS_canonical_SNV CDS_variant 3 B121,B129,B18
Chr7:27403428 C CT 1bp_insertion frameshift_variant 36 A10,A11,A16,A18,A21,B10,B101,B102,B104,B107,B108,B109,B11,B114,B119,B122,B133,B16,B17,B30,B49,B59,B69,B81,C12,C14,C17,C3,C30,C41,C47,C60,C65,C70,C73,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777162.1
1026 aa
N
1
513
1026
WD40_RLD
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1_2
RCC1
FYVE
BRX_N
BRX
C
PF25390 WD40_RLD 246-622 aa PF13540 RCC1_2 290-314 aa PF00415 RCC1 306-355 aa PF13540 RCC1_2 345-369 aa PF00415 RCC1 358-410 aa PF13540 RCC1_2 397-425 aa PF00415 RCC1 414-462 aa PF00415 RCC1 482-530 aa PF13540 RCC1_2 518-542 aa PF13540 RCC1_2 559-587 aa PF00415 RCC1 576-623 aa PF01363 FYVE 627-694 aa PF13713 BRX_N 884-911 aa PF08381 BRX 967-1021 aa
XP_057777163.1
1025 aa
N
1
512
1025
WD40_RLD
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1
RCC1_2
RCC1_2
RCC1
FYVE
BRX_N
BRX
C
PF25390 WD40_RLD 246-622 aa PF13540 RCC1_2 290-314 aa PF00415 RCC1 306-355 aa PF13540 RCC1_2 345-369 aa PF00415 RCC1 358-410 aa PF13540 RCC1_2 397-425 aa PF00415 RCC1 414-462 aa PF00415 RCC1 482-530 aa PF13540 RCC1_2 518-542 aa PF13540 RCC1_2 559-587 aa PF00415 RCC1 576-623 aa PF01363 FYVE 627-694 aa PF13713 BRX_N 884-911 aa PF08381 BRX 967-1020 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057777162.1 Pfam PF25390 WD40_RLD Repeat 246 622 3.5e-79 267.5 RCC1-like domain
XP_057777162.1 Pfam PF13540 RCC1_2 Repeat 290 314 6.1e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF00415 RCC1 Repeat 306 355 1.1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF13540 RCC1_2 Repeat 345 369 6.1e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF00415 RCC1 Repeat 358 410 1.1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF13540 RCC1_2 Repeat 397 425 6.1e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF00415 RCC1 Repeat 414 462 1.1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF00415 RCC1 Repeat 482 530 1.1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF13540 RCC1_2 Repeat 518 542 6.1e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF13540 RCC1_2 Repeat 559 587 6.1e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF00415 RCC1 Repeat 576 623 1.1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777162.1 Pfam PF01363 FYVE Domain 627 694 8.6e-16 58.5 FYVE zinc finger
XP_057777162.1 Pfam PF13713 BRX_N Domain 884 911 1.3e-11 44.7 Transcription factor BRX N-terminal domain
XP_057777162.1 Pfam PF08381 BRX Domain 967 1021 7.5e-24 83.6 Transcription factor regulating root and shoot growth via Pin3
XP_057777163.1 Pfam PF25390 WD40_RLD Repeat 246 622 3.5e-79 267.5 RCC1-like domain
XP_057777163.1 Pfam PF13540 RCC1_2 Repeat 290 314 6e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF00415 RCC1 Repeat 306 355 1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF13540 RCC1_2 Repeat 345 369 6e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF00415 RCC1 Repeat 358 410 1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF13540 RCC1_2 Repeat 397 425 6e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF00415 RCC1 Repeat 414 462 1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF00415 RCC1 Repeat 482 530 1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF13540 RCC1_2 Repeat 518 542 6e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF13540 RCC1_2 Repeat 559 587 6e-41 137.9 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF00415 RCC1 Repeat 576 623 1e-83 276.4 Regulator of chromosome condensation (RCC1) repeat
XP_057777163.1 Pfam PF01363 FYVE Domain 627 694 8.6e-16 58.5 FYVE zinc finger
XP_057777163.1 Pfam PF13713 BRX_N Domain 884 911 1.3e-11 44.7 Transcription factor BRX N-terminal domain
XP_057777163.1 Pfam PF08381 BRX Domain 967 1020 6.7e-21 74.1 Transcription factor regulating root and shoot growth via Pin3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057921180.1
CTTTTTTTGGCTTTATTTGTCAAAGACAATAAAGGGAGTCACGAAAATGACAAAAGTGAATCCATCTCAATCATCGAATCCCAGTTACAAACTGATTTTCAGACTTTTCAGTTGATGACATGGCAGTTTCGCGGAAAAATAGGAATTCTTGAGATTTAGAAATGCAGAGAGAGAGAGAGAGAGCACGAATGTATGCACGTTTGAGGGGTCTCGCCCTGAAAATTCAACACTTTCCAAATCCCATAATTCCCTTCTCACAA...
XM_057921179.1
TTTTTGGCTTTATTTGTCAAAGACAATAAAGGGAGTCACGAAAATGACAAAAGTGAATCCATCTCAATCATCGAATCCCAGTTACAAACTGATTTTCAGACTTTTCAGTTGATGACATGGCAGTTTCGCGGAAAAATAGGAATTCTTGAGATTTAGAAATGCAGAGAGAGAGAGAGAGAGCACGAATGTATGCACGTTTGAGGGGTCTCGCCCTGAAAATTCAACACTTTCCAAATCCCATAATTCCCTTCTCACAAAAA...

CDS

2 records

下载 CDS FASTA
LOC130995768
ATGGCTGATTCGCAGAGGCATAGTGTTGTCGAAAGAGACATTGATCAGGCCATTACATCCCTTAAGAAAGGGGCACACTTGTTGAAGTATGGTCGGAGAGGGAAGCCAAAGTTCTGTCCTTTTCGACTTTCCACGGACGAGTCTACCTTGATATGGTATTATGGAAAAGATGAGAAACGCCTTGAGCTGCGCCATGTTTCCAGGATAATTCCTGGGCAGAGGACTGCAGTATTTCAGCGGTATCCTCGACCTGAGAAGGA...
LOC130995768
ATGGCTGATTCGCAGAGGCATAGTGTTGTCGAAAGAGACATTGATCAGGCCATTACATCCCTTAAGAAAGGGGCACACTTGTTGAAGTATGGTCGGAGAGGGAAGCCAAAGTTCTGTCCTTTTCGACTTTCCACAGACGAGTCTACCTTGATATGGTATTATGGAAAAGATGAGAAACGCCTTGAGCTGCGCCATGTTTCCAGGATAATTCCTGGGCAGAGGACTGCAGTATTTCAGCGGTATCCTCGACCTGAGAAGGA...

Protein

2 records

下载 Protein FASTA
XP_057777162.1
MADSQRHSVVERDIDQAITSLKKGAHLLKYGRRGKPKFCPFRLSTDESTLIWYYGKDEKRLELRHVSRIIPGQRTAVFQRYPRPEKEYQSFSLIHNDRSLDLICKDKDEAEVWFVGLKALIARGSHRKVRNEAKSETASSESPRVWRVSRSSSFFAQDLGEPQRLDNTPHSRLGKVFAEVLSFTAASKNHQLAESPAHALTPQSAGAAENSNSRTSGTETIRVSLSSALSSSSQGSYNEDFDNLGDVFIWGEGTGSGVMG...
XP_057777163.1
MADSQRHSVVERDIDQAITSLKKGAHLLKYGRRGKPKFCPFRLSTDESTLIWYYGKDEKRLELRHVSRIIPGQRTAVFQRYPRPEKEYQSFSLIHNDRSLDLICKDKDEAEVWFVGLKALIARGSHRKVRNEAKSETASSESPRVWRVSRSSSFFAQDLGEPQRLDNTPHSRLGKVFAEVLSFTAASKNHQLAESPAHALTPQSAGAAENSNSRTSGTETIRVSLSSALSSSSQGSYNEDFDNLGDVFIWGEGTGSGVMG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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