Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002783`

染色体: Chr07 坐标: 27748649-27753366 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002783`
名称	SmilChr07G002783
描述	beta-1,3-galactosyltransferase GALT1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	27748649 - 27753366 / `+`

ID 对照

NCBI Gene ID	`LOC130995792`
GeneID	`130995792`
locus_tag	`-`
NCBI Name	`LOC130995792`
原始查询	`SmilChr07G002783`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-1,3-galactosyltransferase GALT1
产物	beta-1%2C3-galactosyltransferase GALT1
Arabidopsis	`AT1G26810` (GALT1) galactosyltransferase1 [Source:NCBI gene (formerly Entrezgene);Acc:839224] identity=61.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os06g0229200` - identity=60; qcov=1.01; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0008378 (galactosyltransferase activity); GO:0030246 (carbohydrate binding)
KEGG	smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00337 (Gal-bind_lectin); PF01762 (Galactosyl_T)
InterPro	-
eggNOG	-
NR	GeneID:130995792

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057777198.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057777198.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057777198.1`
4	Nucleus	细胞核	0.00000	`XP_057777198.1`
5	Chromosome	染色体	0.00000	`XP_057777198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:27750126`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B26
`Chr7:27750126`	`GT`	`G`	1bp_deletion	CDS_variant	1	B26
`Chr7:27750250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:27750798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,D10
`Chr7:27751114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,C16
`Chr7:27751556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:27751665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:27752155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B82,C15,C21,C78
`Chr7:27753018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B25,B49,B79,C36
`Chr7:27753022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777198.1

631 aa

316

631

Gal-bind_lectin

Galactosyl_T

PF00337 Gal-bind_lectin 164-351 aa PF01762 Galactosyl_T 395-579 aa

XP_057777199.1

631 aa

316

631

Gal-bind_lectin

Galactosyl_T

PF00337 Gal-bind_lectin 164-351 aa PF01762 Galactosyl_T 395-579 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777198.1`	Pfam	`PF00337`	Gal-bind_lectin	Domain	164	351	8.8e-28	97.1	Galactoside-binding lectin
`XP_057777198.1`	Pfam	`PF01762`	Galactosyl_T	Family	395	579	5.4e-40	138.0	Galactosyltransferase
`XP_057777199.1`	Pfam	`PF00337`	Gal-bind_lectin	Domain	164	351	8.8e-28	97.1	Galactoside-binding lectin
`XP_057777199.1`	Pfam	`PF01762`	Galactosyl_T	Family	395	579	5.4e-40	138.0	Galactosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921215.1
TTTACTTTTTCCACGACGACTACTTTTCTTTGTATGCGATGAGCTTTGAGCCATCCCTTCCGGACCGGTTCCTCTATTTTACAGTTCTTTCTTTTTCGAAATCTAAGTTTGTAGCAGCAGTCAAGCAAGCTGACACATGATATGATAATAAATAAAACAAGGCGATTAACTTAATTTCATTATGTTTAAACCTTAATACATCTTAATTTCAAGTATAACTAATCTACCCAAGCACCACACACTATCTTTGGCGTCGACTT...

XM_057921216.1
CGGTTCCTCTATTTTACAGTTCTTTCTTTTTCGAAATCTAAGTTTGTAGCAGCAGTCAAGCAAGCTGACACATGATATGATAATAAATAAAACAAGGCGATTAACTTAATTTCATTATGTTTAAACCTTAATACATCTTAATTTCAAGTATAACTAATCTACCCAAGCACCACACACTATCTTTGGCGTCGACTTGAAGTTGAGTTTCAGTCCAAACGTCACGCTTGAAGAATAAATCACCTGCTCCCCTTACTTTCTCG...

CDS

2 records

下载 CDS FASTA

LOC130995792
ATGAAGAAATGGTATGGAGGTGTTCTGACGGCATCTTTCTTGATGTTATTTGTTTTTGGATACTATGTTATTAGAAATCCTATAAATGAGAACTACTTCACTAGCCCTATAAACTTCAACGGGACAAATCCTTTGGAGTGGATAAATGCAGGTAGTCCTCCTGCAATTCCCAATCCGGAAAAAACTTCTCAAGTCTTCTCTGCTGAAGCTATTGTGGCTAATTTCTTTGCTCAAAGGAACTTGTCGAAAGAAGAAAAAAC...

Protein

2 records

下载 Protein FASTA

XP_057777198.1
MKKWYGGVLTASFLMLFVFGYYVIRNPINENYFTSPINFNGTNPLEWINAGSPPAIPNPEKTSQVFSAEAIVANFFAQRNLSKEEKTSLYTWNRLKPLVMHAEGLPNAVEAIKEAGVAWKNLIASIEEEKSQSNGSLPKRGKEKQCPHFLSKMNASELDDNGFKLLVPCGLTQGSSITLIGIPTGLLGNFRIDLTGEPLPGEPDPPVILHYNVRLHGDKITEDPVIVQNTWTIAHEWGDEERCPIPDEGKSKKVDELDQC...

XP_057777199.1
MKKWYGGVLTASFLMLFVFGYYVIRNPINENYFTSPINFNGTNPLEWINAGSPPAIPNPEKTSQVFSAEAIVANFFAQRNLSKEEKTSLYTWNRLKPLVMHAEGLPNAVEAIKEAGVAWKNLIASIEEEKSQSNGSLPKRGKEKQCPHFLSKMNASELDDNGFKLLVPCGLTQGSSITLIGIPTGLLGNFRIDLTGEPLPGEPDPPVILHYNVRLHGDKITEDPVIVQNTWTIAHEWGDEERCPIPDEGKSKKVDELDQC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器