当前解析结果
SmilChr07G002798| 统一新 Gene ID | SmilChr07G002798 |
|---|---|
| 名称 | SmilChr07G002798 |
| 描述 | uncharacterized SmilChr07G002798 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 27996764 - 27999133 / - |
| NCBI Gene ID | LOC130994029 |
|---|---|
| GeneID | 130994029 |
| locus_tag | - |
| NCBI Name | LOC130994029 |
| 原始查询 | SmilChr07G002798 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837977]; symbol=AT1G14180; hit=AT1G14180; species=arabidopsis; confidence=medium |
| 产物 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837977]; symbol=AT1G14180; hit=AT1G14180; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G14180 (AT1G14180)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837977] identity=39.9; qcov=1.07; evalue=1.18e-76; confidence=medium |
| Rice | Os10g0406200 (OsRFPH2-11)- identity=48.8; qcov=0.462; evalue=1.98e-46; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994029 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775050.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057775050.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057775050.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775050.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775050.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:27997128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,C82 |
Chr7:27997217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B66,C83,D10 |
Chr7:27997523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:27997555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B33,C39,C71 |
Chr7:27997594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B138,C83,D10 |
Chr7:27997606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr7:27997638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B112,B51,C6 |
Chr7:27998692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,D9 |
Chr7:27998722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:27998816 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B4 |
Chr7:27998816 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B4 |
Chr7:27998818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。