当前解析结果
SmilChr07G002815| 统一新 Gene ID | SmilChr07G002815 |
|---|---|
| 名称 | SmilChr07G002815 |
| 描述 | mitochondrial uncoupling protein 3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 28178868 - 28181702 / + |
| NCBI Gene ID | LOC130995812 |
|---|---|
| GeneID | 130995812 |
| locus_tag | - |
| NCBI Name | LOC130995812 |
| 原始查询 | SmilChr07G002815 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitochondrial uncoupling protein 3 |
| 产物 | mitochondrial uncoupling protein 3 |
| Arabidopsis | AT1G14140 (UCP3)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:837973] identity=64.1; qcov=0.983; evalue=6.74e-144; confidence=high |
| Rice | Os04g0449000- identity=66.4; qcov=0.923; evalue=1.53e-133; confidence=high |
| GO | GO:0009409 (response to cold); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995812 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057777234.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057777234.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057777234.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777234.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777234.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:28179026 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B72 |
Chr7:28179026 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B72 |
Chr7:28179086 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | A20,C11,C54,C69,C75 |
Chr7:28179086 |
AG |
A |
1bp_deletion | CDS_variant | 5 | A20,C11,C54,C69,C75 |
Chr7:28179116 |
GC |
G |
1bp_deletion | frameshift_variant | 13 | A4,B10,B107,B133,B16,B42,B43,B59,C11,C3,C67,C69,C78 |
Chr7:28181039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:28181055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr7:28181180 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | C33,C46 |
Chr7:28181180 |
TG |
T |
1bp_deletion | CDS_variant | 2 | C33,C46 |
Chr7:28181348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777234.1PF00153
Mito_carr 8-97 aa
PF00153
Mito_carr 103-199 aa
PF00153
Mito_carr 205-294 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777234.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 8 | 97 | 1.9e-68 | 227.0 | Mitochondrial carrier protein |
XP_057777234.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 103 | 199 | 1.9e-68 | 227.0 | Mitochondrial carrier protein |
XP_057777234.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 205 | 294 | 1.9e-68 | 227.0 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。