Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002838`

染色体: Chr07 坐标: 28427582-28433715 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002838`
名称	SmilChr07G002838
描述	isopentenyl phosphate kinase
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	28427582 - 28433715 / `-`

ID 对照

NCBI Gene ID	`LOC130995845`
GeneID	`130995845`
locus_tag	`-`
NCBI Name	`LOC130995845`
原始查询	`SmilChr07G002838`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	isopentenyl phosphate kinase
产物	isopentenyl phosphate kinase
Arabidopsis	`AT1G26640` (AT1G26640) Amino acid kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839204] identity=68; qcov=0.932; evalue=4.02e-128; confidence=high
Rice	`Os01g0764600` (P0403C05.12-1) - identity=61.5; qcov=0.924; evalue=1.34e-105; confidence=high
GO	GO:0005829 (cytosol); GO:0016301 (kinase activity)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00696 (AA_kinase)
InterPro	-
eggNOG	-
NR	GeneID:130995845

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057777272.1`
2	Cytoplasm	细胞质	0.60000	`XP_057777273.1`
3	Nucleus	细胞核	0.40000	`XP_057777274.1`
4	Chloroplast	叶绿体	0.20000	`XP_057777274.1`
5	Chromosome	染色体	0.00000	`XP_057777272.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:28427927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:28428158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B137,B66,C46
`Chr7:28430058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C27,C83
`Chr7:28430234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B77
`Chr7:28432900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr7:28432937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr7:28433485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B66,C23,C44,C82,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777272.1

337 aa

168

337

AA_kinase

PF00696 AA_kinase 26-305 aa

XP_057777273.1

318 aa

159

318

AA_kinase

PF00696 AA_kinase 26-286 aa

XP_057777274.1

278 aa

139

278

AA_kinase

PF00696 AA_kinase 26-256 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777272.1`	Pfam	`PF00696`	AA_kinase	Family	26	305	9.6e-40	137.5	Amino acid kinase family
`XP_057777273.1`	Pfam	`PF00696`	AA_kinase	Family	26	286	7.3e-31	108.4	Amino acid kinase family
`XP_057777274.1`	Pfam	`PF00696`	AA_kinase	Family	26	256	1.6e-34	120.3	Amino acid kinase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057921290.1
TTCGTGAGGGAGTATATAAAAGGAATATTGATTGCGGTACAGTAGTTTTCGCCATTGATTCACACAACGCTAAAAGCATGGTCAATTATGCAACTGCACCCGTTCTAGAGAAGCAATAAACCAGCTTACTATTATATTCGGAAAGTATTCTACTTGTCGACATCGCTGCAGCTGCGAAATCTGATGGATCGGCGCAACAAATCCACCACCACTAACTCCGCCCCCGCCGCCGCCGCCGCAAATGCTAAGTCACTTCACTG...

XM_057921289.1
TTCGTGAGGGAGTATATAAAAGGAATATTGATTGCGGTACAGTAGTTTTCGCCATTGATTCACACAACGCTAAAAGCATGGTCAATTATGCAACTGCACCCGTTCTAGAGAAGCAATAAACCAGCTTACTATTATATTCGGAAAGTATTCTACTTGTCGACATCGCTGCAGCTGCGAAATCTGATGGATCGGCGCAACAAATCCACCACCACTAACTCCGCCCCCGCCGCCGCCGCCGCAAATGCTAAGTCACTTCACTG...

CDS

3 records

下载 CDS FASTA

LOC130995845
ATGGATCGGCGCAACAAATCCACCACCACTAACTCCGCCCCCGCCGCCGCCGCCGCAAATGCTAAGTCACTTCACTGCATAGTCAAGCTCGGGGGTTCTGCAATTACTTGTAAAAATGACTTGGAGACAATAAATGAGGATAATCTTAGTGTCGTTTCATCACAACTGAGGCAAGGAATGATTTCGGGACCATGTCATGGGATGGATTGGAGCAGGAGGCCCGGGTCCACAGAAATCCAAACTGTAGCTGATGAATTAGA...

Protein

3 records

下载 Protein FASTA

XP_057777272.1
MDRRNKSTTTNSAPAAAAANAKSLHCIVKLGGSAITCKNDLETINEDNLSVVSSQLRQGMISGPCHGMDWSRRPGSTEIQTVADELDDKLESDCRRLIVVHGAGSFGHFQASRSGVHKGGLSKPLVKAGFVATRISVTTLNLEIVRALAKEGIPSIGMSPFSCGWSTCERNIAVADTSTVVKALDAGFVPVLHGDAVLDTSRGCTILSGDVIISHLAEHLRPDYVVFLTDVFGVYDRPPTEPSAVLLREIAVHEDGSWSV...

XP_057777273.1
MDRRNKSTTTNSAPAAAAANAKSLHCIVKLGGSAITCKNDLETINEDNLSVVSSQLRQGMISGPCHGMDWSRRPGSTEIQTVADELDDKLESDCRRLIVVHGAGSFGHFQASRSGVHKGGLSKPLVKAGFVATRISVTTLNLEIVRALAKEGIPSIGMSPFSCGWSTCERNVLHGDAVLDTSRGCTILSGDVIISHLAEHLRPDYVVFLTDVFGVYDRPPTEPSAVLLREIAVHEDGSWSVRQPKLQDVSRQVEITIAAH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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