当前解析结果
SmilChr07G002857| 统一新 Gene ID | SmilChr07G002857 |
|---|---|
| 名称 | SmilChr07G002857 |
| 描述 | uncharacterized SmilChr07G002857 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 28727724 - 28732081 / + |
| NCBI Gene ID | LOC130995885 |
|---|---|
| GeneID | 130995885 |
| locus_tag | - |
| NCBI Name | LOC130995885 |
| 原始查询 | SmilChr07G002857 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycosyltransferase family protein 28 [Source:NCBI gene (formerly Entrezgene);Acc:827374]; symbol=AT4G16710; hit=AT4G16710; species=arabidopsis; confidence=high |
| 产物 | glycosyltransferase family protein 28 [Source:NCBI gene (formerly Entrezgene);Acc:827374]; symbol=AT4G16710; hit=AT4G16710; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G16710 (AT4G16710)glycosyltransferase family protein 28 [Source:NCBI gene (formerly Entrezgene);Acc:827374] identity=67.2; qcov=0.978; evalue=5.7e-83; confidence=high |
| Rice | Os02g0467700- identity=74.6; qcov=0.64; evalue=2.29e-57; confidence=high |
| GO | GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0016758 (hexosyltransferase activity); GO:0042406 (extrinsic component of endoplasmic reticulum membrane); GO:0043541 (UDP-N-acetylglucosamine transferase complex) |
| KEGG | - |
| Pfam | PF04101 (Glyco_tran_28_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995885 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057777358.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057777358.1 |
| 3 | Nucleus membrane | 核膜 | 0.40000 | XP_057777357.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057777357.1 |
| 5 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057777357.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:28729893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C2 |
Chr7:28730341 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C73 |
Chr7:28730341 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C73 |
Chr7:28730346 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C73 |
Chr7:28730346 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C73 |
Chr7:28730351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B139 |
Chr7:28730362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:28731024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr7:28731155 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C2 |
Chr7:28731199 |
T |
TGC |
2bp_insertion | frameshift_variant | 59 | A1,A5,A8,B1,B102,B11,B113,B114,B118,B133,B134,B14,B17,B18,B21,B23,B25,B30,B37,B40,B45,B49,B55,B59,B61,B64,B67,B7,B73,B76,B77,B79,B80,B81,B82,B9,B91,B93,B94,C1,C12,C14,C18,C25,C29,C30,C36,C38,C42,C43,C47,C53,C63,C79,C87,C9,D10,D2,D8 |
Chr7:28731267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr7:28731399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777358.1PF04101
Glyco_tran_28_C 13-168 aa
XP_057777359.1PF04101
Glyco_tran_28_C 13-168 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777358.1 |
Pfam | PF04101 |
Glyco_tran_28_C | Domain | 13 | 168 | 8.7e-33 | 114.4 | Glycosyltransferase family 28 C-terminal domain |
XP_057777359.1 |
Pfam | PF04101 |
Glyco_tran_28_C | Domain | 13 | 168 | 8.7e-33 | 114.4 | Glycosyltransferase family 28 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。