Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002869`

染色体: Chr07 坐标: 28895037-28899583 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002869`
名称	SmilChr07G002869
描述	uncharacterized SmilChr07G002869
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	28895037 - 28899583 / `-`

ID 对照

NCBI Gene ID	`LOC130995861`
GeneID	`130995861`
locus_tag	`-`
NCBI Name	`LOC130995861`
原始查询	`SmilChr07G002869`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	appr-1-p processing enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:843266]; symbol=AT1G69340; hit=AT1G69340; species=arabidopsis; confidence=high
产物	appr-1-p processing enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:843266]; symbol=AT1G69340; hit=AT1G69340; species=arabidopsis; confidence=high
Arabidopsis	`AT1G69340` (AT1G69340) appr-1-p processing enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:843266] identity=77.4; qcov=0.993; evalue=0; confidence=high
Rice	`Os10g0444400` - identity=72.5; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00650 (CRAL_TRIO); PF01661 (Macro); PF13716 (CRAL_TRIO_2)
InterPro	-
eggNOG	-
NR	GeneID:130995861

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057777293.1`
2	Cytosol	细胞质基质	1.00000	`XP_057777293.1`
3	Vesicle	囊泡	0.60000	`XP_057777293.1`
4	Cell projection	细胞突起	0.40000	`XP_057777296.1`
5	Endosome	内体	0.20000	`XP_057777296.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:28895721`	`CAT`	`C`	2bp_deletion	frameshift_variant	256	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:28895730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B15,C12,C84
`Chr7:28895831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:28895836`	`C`	`CA`	1bp_insertion	frameshift_variant	16	A1,B111,B128,B129,B131,B140,B49,B7,B79,C19,C36,C42,C46,C5,C61,C71
`Chr7:28896070`	`AG`	`A`	1bp_deletion	frameshift_variant	1	D10
`Chr7:28896070`	`AG`	`A`	1bp_deletion	CDS_variant	1	D10
`Chr7:28896105`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B82,C28,C31
`Chr7:28896105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B82,C28,C31
`Chr7:28896258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C38
`Chr7:28896264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B139
`Chr7:28896296`	`GA`	`G`	1bp_deletion	frameshift_variant	254	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:28896661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C16,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777293.1

567 aa

284

567

Macro

CRAL_TRIO

CRAL_TRIO_2

PF01661 Macro 99-211 aa PF00650 CRAL_TRIO 402-535 aa PF13716 CRAL_TRIO_2 414-545 aa

XP_057777294.1

567 aa

284

567

Macro

CRAL_TRIO

CRAL_TRIO_2

PF01661 Macro 99-211 aa PF00650 CRAL_TRIO 402-535 aa PF13716 CRAL_TRIO_2 414-545 aa

XP_057777295.1

567 aa

284

567

Macro

CRAL_TRIO

CRAL_TRIO_2

PF01661 Macro 99-211 aa PF00650 CRAL_TRIO 402-535 aa PF13716 CRAL_TRIO_2 414-545 aa

XP_057777296.1

561 aa

280

561

Macro

CRAL_TRIO

CRAL_TRIO_2

PF01661 Macro 99-211 aa PF00650 CRAL_TRIO 396-529 aa PF13716 CRAL_TRIO_2 408-539 aa

XP_057777297.1

561 aa

280

561

Macro

CRAL_TRIO

CRAL_TRIO_2

PF01661 Macro 99-211 aa PF00650 CRAL_TRIO 396-529 aa PF13716 CRAL_TRIO_2 408-539 aa

XP_057777298.1

561 aa

280

561

Macro

CRAL_TRIO

CRAL_TRIO_2

PF01661 Macro 99-211 aa PF00650 CRAL_TRIO 396-529 aa PF13716 CRAL_TRIO_2 408-539 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777293.1`	Pfam	`PF01661`	Macro	Domain	99	211	2.4e-29	102.4	Macro domain
`XP_057777293.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	402	535	1.1e-05	25.9	CRAL/TRIO domain
`XP_057777293.1`	Pfam	`PF13716`	CRAL_TRIO_2	Domain	414	545	3.5e-34	118.8	Divergent CRAL/TRIO domain
`XP_057777294.1`	Pfam	`PF01661`	Macro	Domain	99	211	2.4e-29	102.4	Macro domain
`XP_057777294.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	402	535	1.1e-05	25.9	CRAL/TRIO domain
`XP_057777294.1`	Pfam	`PF13716`	CRAL_TRIO_2	Domain	414	545	3.5e-34	118.8	Divergent CRAL/TRIO domain
`XP_057777295.1`	Pfam	`PF01661`	Macro	Domain	99	211	2.4e-29	102.4	Macro domain
`XP_057777295.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	402	535	1.1e-05	25.9	CRAL/TRIO domain
`XP_057777295.1`	Pfam	`PF13716`	CRAL_TRIO_2	Domain	414	545	3.5e-34	118.8	Divergent CRAL/TRIO domain
`XP_057777296.1`	Pfam	`PF01661`	Macro	Domain	99	211	2.4e-29	102.4	Macro domain
`XP_057777296.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	396	529	1.3e-05	25.8	CRAL/TRIO domain
`XP_057777296.1`	Pfam	`PF13716`	CRAL_TRIO_2	Domain	408	539	6.3e-35	121.2	Divergent CRAL/TRIO domain
`XP_057777297.1`	Pfam	`PF01661`	Macro	Domain	99	211	2.4e-29	102.4	Macro domain
`XP_057777297.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	396	529	1.3e-05	25.8	CRAL/TRIO domain
`XP_057777297.1`	Pfam	`PF13716`	CRAL_TRIO_2	Domain	408	539	6.3e-35	121.2	Divergent CRAL/TRIO domain
`XP_057777298.1`	Pfam	`PF01661`	Macro	Domain	99	211	2.4e-29	102.4	Macro domain
`XP_057777298.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	396	529	1.3e-05	25.8	CRAL/TRIO domain
`XP_057777298.1`	Pfam	`PF13716`	CRAL_TRIO_2	Domain	408	539	6.3e-35	121.2	Divergent CRAL/TRIO domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057921313.1
AAAGAAAATATTATTTTTATTTTTAAAAAGTGGGATCTCCACCACCTCACAGTCGTCGATTCTGCGCCAACCTTGAGCTCATTGTTTTTTCCTCCCATTGGAATTTTCTCTTACCCTCTCTAAAATTCCATAGCTGCTTCCCAGATTCCAATTCCCAGGATTTCAATTTTGTTGTGGAACATCTTGATGCCATTGTTGAGATTGATGTTTCTACATATTCAAGCAGATAGGTTGTATATATGATGTTGGCTGGTGGTTAG...

XM_057921310.1
AAAGAAAATATTATTTTTATTTTTAAAAAGTGGGATCTCCACCACCTCACAGTCGTCGATTCTGCGCCAACCTTGAGCTCATTGTTTTTTCCTCCCATTGGAATTTTCTCTTACCCTCTCTAAAATTCCATAGCTGCTTCCCAGATTCCAATTCCCAGGATTTCAATTTTGTTGTGGAACATCTTGATGCCATTGTTGAGATTGATGTTTCTACATATTCAAGCAGATAGGTTGTATATATGATGTTGGCTGGTGGTTAG...

CDS

6 records

下载 CDS FASTA

LOC130995861
ATGAATGATGCTGGGGCTGCCAACACAAATAGAGGTGGATTGGCAATTGAAAGTGGAGATTCTGTGGTGACACTAGATCAAGTTCCATGCTGGAGTAGTTTGGAGTGTAAAGACTTGAATGAGAATGAAGATCCTGCATTTTCAAACTCGTACTTTCCAGACCCGTTGACATCTACAGATGAGGGTGAGGGTTGTTTATATGGCATGCAATCTAGGTTCCCGGTGAATCATGAGGTTAACTCCAAGGTTTACCTTTGGAG...

Protein

6 records

下载 Protein FASTA

XP_057777293.1
MNDAGAANTNRGGLAIESGDSVVTLDQVPCWSSLECKDLNENEDPAFSNSYFPDPLTSTDEGEGCLYGMQSRFPVNHEVNSKVYLWRGNPWILEVDAVVNSTNESLDEAQSSPGLHAAAGPALAEECATLGGCRTGMAKISNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAIGCIYTEAKLYPREPAAHVAIIFALLLGTVRRFLEKQKDNVHAVIFCTAASSDTEIYKRLLPLYFPREK...

XP_057777294.1
MNDAGAANTNRGGLAIESGDSVVTLDQVPCWSSLECKDLNENEDPAFSNSYFPDPLTSTDEGEGCLYGMQSRFPVNHEVNSKVYLWRGNPWILEVDAVVNSTNESLDEAQSSPGLHAAAGPALAEECATLGGCRTGMAKISNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAIGCIYTEAKLYPREPAAHVAIIFALLLGTVRRFLEKQKDNVHAVIFCTAASSDTEIYKRLLPLYFPREK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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