当前解析结果
SmilChr07G002872| 统一新 Gene ID | SmilChr07G002872 |
|---|---|
| 名称 | SmilChr07G002872 |
| 描述 | nodulin-related protein 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 28938623 - 28939120 / + |
| NCBI Gene ID | LOC130994048 |
|---|---|
| GeneID | 130994048 |
| locus_tag | - |
| NCBI Name | LOC130994048 |
| 原始查询 | SmilChr07G002872 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nodulin-related protein 2-like |
| 产物 | nodulin-related protein 2-like |
| Arabidopsis | AT2G03440 (NRP1)nodulin-related protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:814873] identity=48.8; qcov=0.497; evalue=1.08e-16; confidence=low |
| Rice | Os10g0330000- identity=48; qcov=0.455; evalue=2.5e-14; confidence=low |
| GO | GO:0009408 (response to heat); GO:0010115 (regulation of abscisic acid biosynthetic process) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994048 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775069.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057775069.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775069.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775069.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775069.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:28938643 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B129,B86,C17 |
Chr7:28938842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C23 |
Chr7:28938894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B32,C23 |
Chr7:28938922 |
CG |
C |
1bp_deletion | frameshift_variant | 29 | A10,A22,B10,B105,B106,B110,B124,B125,B3,B30,B50,B52,B6,B76,B78,B85,B92,C12,C21,C27,C29,C33,C39,C47,C54,C56,C59,C73,D9 |
Chr7:28938947 |
GA |
G |
1bp_deletion | frameshift_variant | 11 | B105,B11,B121,B131,B34,B41,C11,C55,C69,C74,D8 |
Chr7:28938960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B60,B79,C68,C81 |
Chr7:28938963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B129,B132,B2,C12 |
Chr7:28938970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B69,C12,C38,C59 |
Chr7:28939006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B60,B79,C68,C81 |
Chr7:28939026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr7:28939030 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B94 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。