Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002880`

染色体: Chr07 坐标: 28989242-28993491 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002880`
名称	SmilChr07G002880
描述	probable inactive purple acid phosphatase 1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	28989242 - 28993491 / `+`

ID 对照

NCBI Gene ID	`LOC130995858`
GeneID	`130995858`
locus_tag	`-`
NCBI Name	`LOC130995858`
原始查询	`SmilChr07G002880`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive purple acid phosphatase 1
产物	probable inactive purple acid phosphatase 1
Arabidopsis	`AT1G13750` (AT1G13750) Purple acid phosphatases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837935] identity=71.7; qcov=0.99; evalue=0; confidence=high
Rice	`Os12g0576600` (OsPAP1d) - identity=69.7; qcov=1; evalue=0; confidence=high
GO	GO:0003993 (acid phosphatase activity); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00149 (Metallophos); PF14008 (Metallophos_C); PF16656 (Pur_ac_phosph_N); PF17808 (fn3_PAP)
InterPro	-
eggNOG	-
NR	GeneID:130995858

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.80000	`XP_057777288.1`
2	Vacuole	液泡	0.60000	`XP_057777288.1`
3	Nucleus	细胞核	0.00000	`XP_057777288.1`
4	Chromosome	染色体	0.00000	`XP_057777288.1`
5	Centromere	着丝粒	0.00000	`XP_057777288.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:28990104`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C65
`Chr7:28990104`	`TG`	`T`	1bp_deletion	CDS_variant	1	C65
`Chr7:28990151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,C11,C67,C69
`Chr7:28990220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr7:28990369`	`CA`	`C`	1bp_deletion	frameshift_variant	29	A21,A25,B105,B118,B12,B127,B134,B32,B34,B35,B41,B43,B55,B58,B64,B87,C17,C23,C32,C41,C46,C5,C77,C79,C83,C84,D2,D6,D8
`Chr7:28990379`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A4,C78
`Chr7:28990379`	`TG`	`T`	1bp_deletion	CDS_variant	2	A4,C78
`Chr7:28990421`	`GAC`	`G`	2bp_deletion	frameshift_variant	20	A21,A25,B118,B12,B127,B134,B32,B34,B35,B55,B58,B64,B87,C23,C32,C41,C46,C77,D2,D8
`Chr7:28990425`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A4,C78
`Chr7:28990425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,C78
`Chr7:28990448`	`AAC`	`A`	2bp_deletion	frameshift_variant	8	B12,B134,B34,B35,C23,C41,C46,D2
`Chr7:28990691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777288.1

613 aa

306

613

fn3_PAP

Pur_ac_phosph_N

Metallophos

Metallophos_C

PF17808 fn3_PAP 46-164 aa PF16656 Pur_ac_phosph_N 171-277 aa PF00149 Metallophos 289-504 aa PF14008 Metallophos_C 529-588 aa

XP_057777289.1

613 aa

306

613

fn3_PAP

Pur_ac_phosph_N

Metallophos

Metallophos_C

PF17808 fn3_PAP 46-164 aa PF16656 Pur_ac_phosph_N 171-277 aa PF00149 Metallophos 289-504 aa PF14008 Metallophos_C 529-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777288.1`	Pfam	`PF17808`	fn3_PAP	Domain	46	164	8.5e-43	145.9	Fn3-like domain from Purple Acid Phosphatase
`XP_057777288.1`	Pfam	`PF16656`	Pur_ac_phosph_N	Domain	171	277	2.3e-11	44.8	Purple acid Phosphatase, N-terminal domain
`XP_057777288.1`	Pfam	`PF00149`	Metallophos	Domain	289	504	3.7e-18	67.4	Calcineurin-like phosphoesterase
`XP_057777288.1`	Pfam	`PF14008`	Metallophos_C	Domain	529	588	9.2e-16	59.0	Iron/zinc purple acid phosphatase-like protein C
`XP_057777289.1`	Pfam	`PF17808`	fn3_PAP	Domain	46	164	8.5e-43	145.9	Fn3-like domain from Purple Acid Phosphatase
`XP_057777289.1`	Pfam	`PF16656`	Pur_ac_phosph_N	Domain	171	277	2.3e-11	44.8	Purple acid Phosphatase, N-terminal domain
`XP_057777289.1`	Pfam	`PF00149`	Metallophos	Domain	289	504	3.7e-18	67.4	Calcineurin-like phosphoesterase
`XP_057777289.1`	Pfam	`PF14008`	Metallophos_C	Domain	529	588	9.2e-16	59.0	Iron/zinc purple acid phosphatase-like protein C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921305.1
CAAGGGCTAAATTTTTTTCTAGAAAAGAGTGAGCCTGGGAATGCGCCAAATCGAATGTACCATGAAAGATTCCAAAACTTGTTTGACTTAACACTTCAATTTCTCAATTTGATCGACATATGTATATAAATATTCGCTGCTCTTTTTCTAACGTTGTCACTCGAAGATTATCAACAACTGAAACAGACAGATAGCATAGTCCACAGAAACATCAGTTATATGCAGTAGAGTGTTCAACTTGGATCAAATCTTTTGCTTTT...

XM_057921306.1
CTAGAAAAGAGTGAGCCTGGGAATGCGCCAAATCGAATGTACCATGAAAGATTCCAAAACTTGTTTGACTTAACACTTCAATTTCTCAATTTGATCGACATATGTATATAAATATTCGCTGCTCTTTTTCTAACGTTGTCACTCGAAGATTATCAACAACTGAAACAGACAGATAGCATAGTCCACAGAAACATCAGTTATATGCAGTAGAGTGTTCAACTTGGATCAAATCTTTTGCTTTTCATCCCAACTCCTAAAGG...

CDS

2 records

下载 CDS FASTA

LOC130995858
ATGAAAGCTTTGGTGAAACTTGTTGTGGTTTTATGGGCTCTGGTGAGGCTCGAAGAGGCAGCAGCAGATGGTGTTCAACCTCTTTCAGTAATTGCTATCGAGAAGGCTGTTCTTGCTTTAGATAAGAATGCTTATGTTAAAGCTTCTCCCTCAATTCTTGGACTCGGTGGAAACAACCAAGATTGGATTACTGTAGAATATAAGAGCACAAACCAGTCTGTTGGTGACTGGATTGGTGTATTTTCTCCTTCCAACTTCAG...

Protein

2 records

下载 Protein FASTA

XP_057777288.1
MKALVKLVVVLWALVRLEEAAADGVQPLSVIAIEKAVLALDKNAYVKASPSILGLGGNNQDWITVEYKSTNQSVGDWIGVFSPSNFSSSTCLPENTRVGPPYLCTAPIKYQFANFSNPKYTYTGKGSLKFQLINQRSDFSFGLFSGGVSNPKLVAVSNVIAFANPNAPLYPRLAQGKEWNEMTVTWTSGYDIDGAQPFVHWGPKGGPRARSLAVTLTFDRSSMCGAPARTVGWRDPGFIHTGFLKDLWPNSVYTYKLGHK...

XP_057777289.1
MKALVKLVVVLWALVRLEEAAADGVQPLSVIAIEKAVLALDKNAYVKASPSILGLGGNNQDWITVEYKSTNQSVGDWIGVFSPSNFSSSTCLPENTRVGPPYLCTAPIKYQFANFSNPKYTYTGKGSLKFQLINQRSDFSFGLFSGGVSNPKLVAVSNVIAFANPNAPLYPRLAQGKEWNEMTVTWTSGYDIDGAQPFVHWGPKGGPRARSLAVTLTFDRSSMCGAPARTVGWRDPGFIHTGFLKDLWPNSVYTYKLGHK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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