Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002882`

染色体: Chr07 坐标: 29038183-29045642 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002882`
名称	SmilChr07G002882
描述	LRR receptor-like serine/threonine-protein kinase RPK2
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29038183 - 29045642 / `+`

ID 对照

NCBI Gene ID	`LOC130995853`
GeneID	`130995853`
locus_tag	`-`
NCBI Name	`LOC130995853`
原始查询	`SmilChr07G002882`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase RPK2
产物	LRR receptor-like serine/threonine-protein kinase RPK2
Arabidopsis	`AT3G02130` (RPK2) receptor-like protein kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:821240] identity=37.7; qcov=0.987; evalue=3.71e-157; confidence=medium
Rice	`Os07g0602700` - identity=41.2; qcov=0.916; evalue=4.56e-170; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130995853

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057777281.1`
2	Nucleus	细胞核	0.00000	`XP_057777281.1`
3	Chromosome	染色体	0.00000	`XP_057777281.1`
4	Centromere	着丝粒	0.00000	`XP_057777281.1`
5	Chromatin	染色质	0.00000	`XP_057777281.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29042871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr7:29042891`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B108
`Chr7:29042891`	`TC`	`T`	1bp_deletion	CDS_variant	1	B108
`Chr7:29042928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29043028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:29043041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,B72,B95,C83
`Chr7:29043131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:29043291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr7:29043333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B14,B47,C77
`Chr7:29043588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr7:29043719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr7:29043735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777281.1

873 aa

436

873

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 38-77 aa PF13855 LRR_8 181-221 aa PF00560 LRR_1 186-208 aa PF00560 LRR_1 211-231 aa PF13855 LRR_8 233-294 aa PF00560 LRR_1 234-254 aa PF00560 LRR_1 259-281 aa PF00560 LRR_1 307-329 aa PF13516 LRR_6 429-444 aa PF00560 LRR_1 431-450 aa PF00069 Pkinase 592-791 aa PF07714 PK_Tyr_Ser-Thr 595-862 aa

XP_057777282.1

873 aa

436

873

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777281.1`	Pfam	`PF08263`	LRRNT_2	Family	38	77	8.5e-13	49.1	Leucine rich repeat N-terminal domain
`XP_057777281.1`	Pfam	`PF13855`	LRR_8	Repeat	181	221	2e-29	101.8	Leucine rich repeat
`XP_057777281.1`	Pfam	`PF00560`	LRR_1	Repeat	186	208	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777281.1`	Pfam	`PF00560`	LRR_1	Repeat	211	231	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777281.1`	Pfam	`PF13855`	LRR_8	Repeat	233	294	2e-29	101.8	Leucine rich repeat
`XP_057777281.1`	Pfam	`PF00560`	LRR_1	Repeat	234	254	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777281.1`	Pfam	`PF00560`	LRR_1	Repeat	259	281	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777281.1`	Pfam	`PF00560`	LRR_1	Repeat	307	329	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777281.1`	Pfam	`PF13516`	LRR_6	Repeat	429	444	2e-14	53.1	Leucine Rich repeat
`XP_057777281.1`	Pfam	`PF00560`	LRR_1	Repeat	431	450	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777281.1`	Pfam	`PF00069`	Pkinase	Domain	592	791	1.6e-42	146.5	Protein kinase domain
`XP_057777281.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	595	862	1.5e-40	139.8	Protein tyrosine and serine/threonine kinase
`XP_057777282.1`	Pfam	`PF08263`	LRRNT_2	Family	38	77	8.5e-13	49.1	Leucine rich repeat N-terminal domain
`XP_057777282.1`	Pfam	`PF13855`	LRR_8	Repeat	181	221	2e-29	101.8	Leucine rich repeat
`XP_057777282.1`	Pfam	`PF00560`	LRR_1	Repeat	186	208	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777282.1`	Pfam	`PF00560`	LRR_1	Repeat	211	231	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777282.1`	Pfam	`PF13855`	LRR_8	Repeat	233	294	2e-29	101.8	Leucine rich repeat
`XP_057777282.1`	Pfam	`PF00560`	LRR_1	Repeat	234	254	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777282.1`	Pfam	`PF00560`	LRR_1	Repeat	259	281	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777282.1`	Pfam	`PF00560`	LRR_1	Repeat	307	329	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777282.1`	Pfam	`PF13516`	LRR_6	Repeat	429	444	2e-14	53.1	Leucine Rich repeat
`XP_057777282.1`	Pfam	`PF00560`	LRR_1	Repeat	431	450	1.6e-30	99.2	Leucine Rich Repeat
`XP_057777282.1`	Pfam	`PF00069`	Pkinase	Domain	592	791	1.6e-42	146.5	Protein kinase domain
`XP_057777282.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	595	862	1.5e-40	139.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921299.1
TTTACATACTTTTACACTATAATCTTATTCTTCTTAATTCCCGTGCCAAAAAGAAGCGCACCACTTTGGTCGGGACGGAGGGAGTATCACATAGATTGTGATAAAATTGCAAAAAGGCCCTCTCTCGGAGCACTTGATGATCACGTGGCACAAACTGAGAGCAGTTGAAAATAAGGCGCCAAAGAGACGATCGACATGCGATGCAGTTGTATCTATAAAATCCGAAAACCCAGCTCTTCCTTCCGTTTGCATTACATGAT...

XM_057921298.1
TTTACATACTTTTACACTATAATCTTATTCTTCTTAATTCCCGTGCCAAAAAGAAGCGCACCACTTTGGTCGGGACGGAGGGAGTATCACATAGATTGTGATAAAATTGCAAAAAGGCCCTCTCTCGGAGCACTTGATGATCACGTGGCACAAACTGAGAGCAGTTGAAAATAAGGCGCCAAAGAGACGATCGACATGCGATGCAGTTGTATCTATAAAATCCGAAAACCCAGCTCTTCCTTCCGTTTGCATTACATGAT...

CDS

2 records

下载 CDS FASTA

LOC130995853
ATGGCGGGGATGGCAGAGATGGGGAAGGAGATTTCTCTGCTTTCTGCTGCACTTTATCTTCATTCATTTATCCTTTTTCTGTGCATTCTCTCGACGGTTTCTGCACAATTCTCTGATGAAAGAATGGCACTTCTTGGATTGAAGATATCATTTTCTGATCCTCATAGGATTCTCGACAGCTGGAATGCCCGTAGCTCCGACCATTGCTCGTGGTTCGGAGTCTCCTGCAGTTCTGACCTCAGAGTTACTAGGCTGGAAAT...

Protein

2 records

下载 Protein FASTA

XP_057777281.1
MAGMAEMGKEISLLSAALYLHSFILFLCILSTVSAQFSDERMALLGLKISFSDPHRILDSWNARSSDHCSWFGVSCSSDLRVTRLEIGGNFSRSPPCYIESQSVMHGLGISRNCSDQSAISGTLGGRLSAVIGKFTELRVLSLGFNEIGGEIPAEIWGLRNLQVLDLEGNDFLGRFSSFEFFGLKKLRVLNLAYNRIFGMFPPSLSECRGLRSLNLAGNRIIGVIPGFLGGFRKLRVVNLSFNRLVGYIPSNLGYDCGNL...

XP_057777282.1
MAGMAEMGKEISLLSAALYLHSFILFLCILSTVSAQFSDERMALLGLKISFSDPHRILDSWNARSSDHCSWFGVSCSSDLRVTRLEIGGNFSRSPPCYIESQSVMHGLGISRNCSDQSAISGTLGGRLSAVIGKFTELRVLSLGFNEIGGEIPAEIWGLRNLQVLDLEGNDFLGRFSSFEFFGLKKLRVLNLAYNRIFGMFPPSLSECRGLRSLNLAGNRIIGVIPGFLGGFRKLRVVNLSFNRLVGYIPSNLGYDCGNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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