Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002889`

染色体: Chr07 坐标: 29178772-29184107 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002889`
名称	SmilChr07G002889
描述	mitotic checkpoint serine/threonine-protein kinase BUB1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29178772 - 29184107 / `-`

ID 对照

NCBI Gene ID	`LOC130995877`
GeneID	`130995877`
locus_tag	`-`
NCBI Name	`LOC130995877`
原始查询	`SmilChr07G002889`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitotic checkpoint serine/threonine-protein kinase BUB1-like
产物	mitotic checkpoint serine/threonine-protein kinase BUB1-like
Arabidopsis	`AT2G20635` (AT2G20635) protein kinase and Mad3-BUB1-I domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816591] identity=57.7; qcov=0.961; evalue=2.72e-125; confidence=high
Rice	`Os07g0508500` (BRK1) - identity=48.9; qcov=0.984; evalue=1.44e-101; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007094 (mitotic spindle assembly checkpoint signaling); GO:0051754 (meiotic sister chromatid cohesion, centromeric)
KEGG	-
Pfam	PF00069 (Pkinase)
InterPro	-
eggNOG	-
NR	GeneID:130995877

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057777340.1`
2	Cytosol	细胞质基质	1.00000	`XP_057777340.1`
3	Nucleus	细胞核	0.40000	`XP_057777342.1`
4	Chromosome	染色体	0.00000	`XP_057777340.1`
5	Centromere	着丝粒	0.00000	`XP_057777340.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29179830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr7:29180205`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B77
`Chr7:29180205`	`TC`	`T`	1bp_deletion	CDS_variant	1	B77
`Chr7:29180228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C28,C38,C75
`Chr7:29180431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr7:29180433`	`G`	`A`	EMS_canonical_SNV	stop_gained	41	A16,A3,B108,B11,B117,B119,B125,B133,B134,B14,B2,B26,B45,B54,B56,B57,B69,B80,B95,B96,C12,C22,C24,C3,C30,C34,C38,C39,C40,C43,C45,C5,C50,C51,C60,C74,C78,C87,D10,D11,D5
`Chr7:29180454`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B11,C79
`Chr7:29180454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C79
`Chr7:29180736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B69,C57,C70,D3
`Chr7:29180796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr7:29180976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777340.1

315 aa

158

315

Pkinase

PF00069 Pkinase 154-287 aa

XP_057777341.1

315 aa

158

315

Pkinase

PF00069 Pkinase 154-287 aa

XP_057777342.1

310 aa

155

310

Pkinase

PF00069 Pkinase 154-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777340.1`	Pfam	`PF00069`	Pkinase	Domain	154	287	2e-08	34.7	Protein kinase domain
`XP_057777341.1`	Pfam	`PF00069`	Pkinase	Domain	154	287	2e-08	34.7	Protein kinase domain
`XP_057777342.1`	Pfam	`PF00069`	Pkinase	Domain	154	287	1.5e-08	35.1	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057921359.1
AAATACATTATTAGAAACCTAAATACCAAAAATTAAATAATAAAAGTGAAACAAAAGAAAAAAAAAAAGAAAAAAAAAAGAAAGAAAAAGATTTGACTTCATTTCTTCAACCCCTAAAATCCCTATTCGTTGCTCCCGCTCAATTTTCACGCTAACACCTCAAAATTTCCCCCAAATCGGACCTGGCCTCTTTCTCTCTTCACCATCGCCGTGCCCTGCCACCGCCGTCGCGACTCGCCGCCACGACCAGCGCCGCCCGG...

XM_057921357.1
ATACATTATTAGAAACCTAAATACCAAAAATTAAATAATAAAAGTGAAACAAAAGAAAAAAAAAAAGAAAAAAAAAAGAAAGAAAAAGATTTGACTTCATTTCTTCAACCCCTAAAATCCCTATTCGTTGCTCCCGCTCAATTTTCACGCTAACACCTCAAAATTTCCCCCAAATCGGACCTGGCCTCTTTCTCTCTTCACCATCGCCGTGCCCTGCCACCGCCGTCGCGACTCGCCGCCACGACCAGCGCCGCCCGGCA...

CDS

3 records

下载 CDS FASTA

LOC130995877
ATGGATGGTAGCTCAGATTATGAAAGAGTTTTTAAGGAAATAGAGGAGCACAGGATTTGCATACGCAAAGCGCTGCTTTATGAATCATTTGCTTTGTTTCTGGAAGCAAAAGGCAGACTGATAGATGCTTGTATGATTTATCATCTTGGCATCTCAAGAAATGCTGAGCCACTGGGGAGACTAAAAAAAGCTCAGGTTCTATTTCTCGAGAGAACGTCTGAAAGAGTAACTAATGGATCATTTCAAAAGATGAAAAATGA...

Protein

3 records

下载 Protein FASTA

XP_057777340.1
MDGSSDYERVFKEIEEHRICIRKALLYESFALFLEAKGRLIDACMIYHLGISRNAEPLGRLKKAQVLFLERTSERVTNGSFQKMKNDISVEDGENFINPWSVSTLKNLLQKMNSKVVEYEGYHSSNKAYPGKVALSSLQKSAKNKDITIGRENYQIRGRAGQGGFAQVFKAYVDGQPDDVVALKIQKPPFPWEFYMYRQLDIRIPEKEKSFGFAHRLHLYSDYSVIVSDYFAHGTLQDAMNCNVVTGGSMDEVLCIYYTI...

XP_057777341.1
MDGSSDYERVFKEIEEHRICIRKALLYESFALFLEAKGRLIDACMIYHLGISRNAEPLGRLKKAQVLFLERTSERVTNGSFQKMKNDISVEDGENFINPWSVSTLKNLLQKMNSKVVEYEGYHSSNKAYPGKVALSSLQKSAKNKDITIGRENYQIRGRAGQGGFAQVFKAYVDGQPDDVVALKIQKPPFPWEFYMYRQLDIRIPEKEKSFGFAHRLHLYSDYSVIVSDYFAHGTLQDAMNCNVVTGGSMDEVLCIYYTI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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