Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002911`

染色体: Chr07 坐标: 29511170-29519133 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002911`
名称	SmilChr07G002911
描述	serine/threonine-protein kinase 1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29511170 - 29519133 / `+`

ID 对照

NCBI Gene ID	`LOC130995901`
GeneID	`130995901`
locus_tag	`-`
NCBI Name	`LOC130995901`
原始查询	`SmilChr07G002911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase 1
产物	serine/threonine-protein kinase 1
Arabidopsis	`AT1G69220` (SIK1) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843253] identity=59; qcov=1.07; evalue=0; confidence=high
Rice	`Os03g0755000` - identity=54.2; qcov=0.821; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction); GO:0043408 (regulation of MAPK cascade)
KEGG	-
Pfam	PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130995901

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057777368.1`
2	Cell membrane	细胞膜	0.80000	`XP_057777368.1`
3	Cytoplasm	细胞质	0.20000	`XP_057777368.1`
4	Endocytic vesicle	Endocytic vesicle	0.20000	`XP_057777368.1`
5	Clathrin-coated vesicle	Clathrin-coated vesicle	0.20000	`XP_057777368.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29511660`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:29511745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr7:29513210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B42,B43,C50,D10
`Chr7:29513420`	`T`	`TA`	1bp_insertion	frameshift_variant	3	B67,C21,C36
`Chr7:29513420`	`T`	`TA`	1bp_insertion	CDS_variant	3	B67,C21,C36
`Chr7:29513422`	`T`	`TGA`	2bp_insertion	stop_gained,frameshift_variant	2	B50,C39
`Chr7:29513422`	`T`	`TGA`	2bp_insertion	CDS_variant	2	B50,C39
`Chr7:29514159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B131,B42,B86
`Chr7:29514181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B131,B42,B86
`Chr7:29514313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B131,B86,B89,C75
`Chr7:29514322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B131,B86,B89,C75
`Chr7:29514335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B131,B86,B89,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777368.1

813 aa

406

813

Pkinase

PK_Tyr_Ser-Thr

ABC1

PF00069 Pkinase 250-504 aa PF07714 PK_Tyr_Ser-Thr 252-500 aa PF03109 ABC1 322-401 aa

XP_057777369.1

811 aa

406

811

Pkinase

PK_Tyr_Ser-Thr

ABC1

PF00069 Pkinase 250-504 aa PF07714 PK_Tyr_Ser-Thr 252-500 aa PF03109 ABC1 322-401 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777368.1`	Pfam	`PF00069`	Pkinase	Domain	250	504	2.8e-68	230.9	Protein kinase domain
`XP_057777368.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	252	500	2.2e-49	168.8	Protein tyrosine and serine/threonine kinase
`XP_057777368.1`	Pfam	`PF03109`	ABC1	Domain	322	401	1.1e-08	35.3	ABC1 atypical kinase-like domain
`XP_057777369.1`	Pfam	`PF00069`	Pkinase	Domain	250	504	3.6e-68	230.5	Protein kinase domain
`XP_057777369.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	252	500	2.3e-49	168.8	Protein tyrosine and serine/threonine kinase
`XP_057777369.1`	Pfam	`PF03109`	ABC1	Domain	322	401	1.1e-08	35.3	ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921386.1
ATTTGGATTTTAGGAACTAATATCGTTTTCAACGATTTTAGCTTGGGGAACAATTGCTGTAATAACTAGTCCTCCACTTTCCAGCTCTCTCTCTCACGCGCACACACTGATCCAGAGGCAGTGAGAGAAAATGGACTTCTCCCCGAAGTCCTGGCGAGCGCGGAAGCCCCCGCCGCCGAAGAATCCCGACATTTATTCGTCGGTGGTGATCCACGACAAAGACGACGCCGCATCGAGAGAGCCGGAGCCCGACGCCGACA...

XM_057921385.1
TTTGGATTTTAGGAACTAATATCGTTTTCAACGATTTTAGCTTGGGGAACAATTGCTGTAATAACTAGTCCTCCACTTTCCAGCTCTCTCTCTCACGCGCACACACTGATCCAGAGGCAGTGAGAGAAAATGGACTTCTCCCCGAAGTCCTGGCGAGCGCGGAAGCCCCCGCCGCCGAAGAATCCCGACATTTATTCGTCGGTGGTGATCCACGACAAAGACGACGCCGCATCGAGAGAGCCGGAGCCCGACGCCGACAT...

CDS

2 records

下载 CDS FASTA

LOC130995901
ATGGACTTCTCCCCGAAGTCCTGGCGAGCGCGGAAGCCCCCGCCGCCGAAGAATCCCGACATTTATTCGTCGGTGGTGATCCACGACAAAGACGACGCCGCATCGAGAGAGCCGGAGCCCGACGCCGACATCTACGCCACGATGTTATACAAGGACGAGGAGGAATCGCTGCCTCCTCTATTGAAGCGCCTCCCCAAGGACTTCGGCGGCGGCGGGGACGACATCGACGATTCCGACGACGACTCCTCTATCTCCGGGAC...

Protein

2 records

下载 Protein FASTA

XP_057777368.1
MDFSPKSWRARKPPPPKNPDIYSSVVIHDKDDAASREPEPDADIYATMLYKDEEESLPPLLKRLPKDFGGGGDDIDDSDDDSSISGTMIVKTDRRKSSYPTRNSSVSSSYSKPRSVAAAPVWDRRSPRGRIESDEEDEEDEENAGDFSTFVVRGRNDDGDKEDEEEGMGTIVRKGSGGGGGGTMRRAVESMQKVGEIGGMGYGRRRKSSGGGGEGASGTGFAPPRQHGSGKISSSSITECIAREDPSTKYELLHELGKGS...

XP_057777369.1
MDFSPKSWRARKPPPPKNPDIYSSVVIHDKDDAASREPEPDADIYATMLYKDEEESLPPLLKRLPKDFGGGGDDIDDSDDDSSISGTMIVKTDRRKSSYPTRNSSVSSSYSKPRSVAAAPVWDRRSPRGRIESDEEDEEDEENAGDFSTFVVRGRNDDGDKEDEEEGMGTIVRKGSGGGGGGTMRRAVESMQKVGEIGGMGYGRRRKSSGGGGEGASGTGFAPPRQHGSGKISSSSITECIAREDPSTKYELLHELGKGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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