当前解析结果
SmilChr07G002913| 统一新 Gene ID | SmilChr07G002913 |
|---|---|
| 名称 | SmilChr07G002913 |
| 描述 | probable RNA-dependent RNA polymerase 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 29522730 - 29526827 / - |
| NCBI Gene ID | LOC130995900 |
|---|---|
| GeneID | 130995900 |
| locus_tag | - |
| NCBI Name | LOC130995900 |
| 原始查询 | SmilChr07G002913 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable RNA-dependent RNA polymerase 1 |
| 产物 | probable RNA-dependent RNA polymerase 1 |
| Arabidopsis | AT1G14790 (RDR1)RNA-dependent RNA polymerase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838044] identity=61; qcov=0.998; evalue=0; confidence=high |
| Rice | Os02g0736200 (RDR1)- identity=65.1; qcov=0.659; evalue=0; confidence=high |
| GO | GO:0003676 (nucleic acid binding); GO:0003968 (RNA-directed RNA polymerase activity); GO:0030422 (siRNA processing); GO:0031380 (nuclear RNA-directed RNA polymerase complex) |
| KEGG | - |
| Pfam | PF05183 (RdRP); PF24823 (PH_RDR2); PF26250 (RRM_RdRP1_2); PF26252 (RdRP_helical); PF26253 (RdRP_head) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995900 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777367.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057777367.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057777367.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777367.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777367.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:29522847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B126,B32,C20,C26,C49 |
Chr7:29523146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B110,B17 |
Chr7:29523326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:29524027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:29524054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr7:29524146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B72,B88,C65 |
Chr7:29524156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:29524384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,C28,C75 |
Chr7:29524753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C24,C54 |
Chr7:29524788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr7:29524828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr7:29525091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B72,B88,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777367.1PF26250
RRM_RdRP1_2 4-84 aa
PF24823
PH_RDR2 104-244 aa
PF26252
RdRP_helical 261-340 aa
PF05183
RdRP 365-931 aa
PF26253
RdRP_head 952-1091 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777367.1 |
Pfam | PF26250 |
RRM_RdRP1_2 | Domain | 4 | 84 | 5.7e-15 | 56.2 | RdRP1/2, RRM domain |
XP_057777367.1 |
Pfam | PF24823 |
PH_RDR2 | Domain | 104 | 244 | 1.1e-36 | 126.8 | RDR2 PH-like domain |
XP_057777367.1 |
Pfam | PF26252 |
RdRP_helical | Domain | 261 | 340 | 8.2e-13 | 49.0 | RNA dependent RNA polymerase, helical domain |
XP_057777367.1 |
Pfam | PF05183 |
RdRP | Family | 365 | 931 | 1.2e-202 | 675.4 | RNA dependent RNA polymerase |
XP_057777367.1 |
Pfam | PF26253 |
RdRP_head | Domain | 952 | 1091 | 9.2e-45 | 153.1 | RdRP, head domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。