当前解析结果
SmilChr07G002931| 统一新 Gene ID | SmilChr07G002931 |
|---|---|
| 名称 | SmilChr07G002931 |
| 描述 | protein BIG GRAIN 1-like E |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 29664468 - 29665652 / - |
| NCBI Gene ID | LOC130995979 |
|---|---|
| GeneID | 130995979 |
| locus_tag | - |
| NCBI Name | LOC130995979 |
| 原始查询 | SmilChr07G002931 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein BIG GRAIN 1-like E |
| 产物 | protein BIG GRAIN 1-like E |
| Arabidopsis | AT3G13980 (AT3G13980)SKI/DACH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:820612] identity=30.5; qcov=0.757; evalue=9.11e-11; confidence=low |
| Rice | -- |
| GO | GO:0009734 (auxin-activated signaling pathway) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995979 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777495.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057777495.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057777495.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777495.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777495.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:29664698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:29664728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C53,C65,D4 |
Chr7:29664785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B88,C46,D11 |
Chr7:29664810 |
TCA |
T |
2bp_deletion | frameshift_variant | 40 | A13,A15,A25,B1,B10,B125,B128,B139,B14,B20,B24,B30,B46,B54,B56,B57,B6,B73,B74,B83,B84,B90,B97,C10,C22,C28,C29,C43,C50,C53,C59,C6,C64,C66,C67,C70,C81,C82,D3,D4 |
Chr7:29664979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr7:29665048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr7:29665053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr7:29665056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr7:29665058 |
G |
GTA |
2bp_insertion | frameshift_variant | 1 | B100 |
Chr7:29665058 |
G |
GTA |
2bp_insertion | CDS_variant | 1 | B100 |
Chr7:29665073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr7:29665102 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C33,D2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。