当前解析结果
SmilChr07G002970| 统一新 Gene ID | SmilChr07G002970 |
|---|---|
| 名称 | SmilChr07G002970 |
| 描述 | AAA-ATPase At2g46620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 30209884 - 30221671 / - |
| NCBI Gene ID | LOC130994067 |
|---|---|
| GeneID | 130994067 |
| locus_tag | - |
| NCBI Name | LOC130994067 |
| 原始查询 | SmilChr07G002970 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-ATPase At2g46620-like |
| 产物 | AAA-ATPase At2g46620-like |
| Arabidopsis | AT2G46620 (AT2G46620)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819274] identity=54.8; qcov=0.62; evalue=5.11e-40; confidence=medium |
| Rice | Os03g0114400 (OSJNBa0090O10.13)- identity=39.9; qcov=0.89; evalue=6.07e-34; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994067 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057775086.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775086.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057775086.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057775086.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775086.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:30209890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B130,B8 |
Chr7:30209905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B29,C27,C54,C8 |
Chr7:30209907 |
G |
A |
EMS_canonical_SNV | stop_gained | 89 | A10,A11,A14,A15,A2,A5,A8,A9,B102,B110,B112,B114,B118,B124,B129,B130,B132,B134,B135,B14,B140,B15,B16,B17,B18,B2,B22,B23,B25,B28,B3,B31,B33,B37,B53,B58,B59,B6,B61,B65,B68,B69,B70,B71,B73,B78,B80,B85,B88,B89,B9,B90,B91,B92,B95,B96,B98,C1,C13,C16,C18,C21,C26,C29,C3,C30,C33,C39,C40,C44,C45,C56,C6,C60,C62,C63,C64,C65,C66,C67,C7,C72,C74,C78,C84,C85,C86,C87,D2 |
Chr7:30209933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B5,B62 |
Chr7:30209938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr7:30209999 |
CT |
C |
1bp_deletion | frameshift_variant | 25 | A1,A5,B106,B113,B12,B121,B20,B21,B33,B42,B45,B55,B59,B76,B93,C15,C21,C29,C5,C53,C69,C73,D1,D5,D8 |
Chr7:30210018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,B86 |
Chr7:30210020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:30210021 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,A3,B140,C49,D10 |
Chr7:30210022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C32 |
Chr7:30210032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B140,D10 |
Chr7:30210034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B140,C36,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。