Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003018

染色体: Chr07 坐标: 31224933-31225937 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003018
名称SmilChr07G003018
描述uncharacterized SmilChr07G003018
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向31224933 - 31225937 / -

ID 对照

NCBI Gene IDLOC130994085
GeneID130994085
locus_tag-
NCBI NameLOC130994085
原始查询SmilChr07G003018

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low
产物aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low
ArabidopsisAT2G06105 (AT2G06105)
aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]
identity=34; qcov=0.348; evalue=2.38e-08; confidence=low
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130994085

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057775102.1
2 Cytoplasm 细胞质 0.80000 XP_057775102.1
3 Chromosome 染色体 0.00000 XP_057775102.1
4 Centromere 着丝粒 0.00000 XP_057775102.1
5 Chromatin 染色质 0.00000 XP_057775102.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:31224939 C T EMS_canonical_SNV CDS_variant 1 C43
Chr7:31224952 G A EMS_canonical_SNV CDS_variant 4 B42,C49,C73,C77
Chr7:31224962 C T EMS_canonical_SNV CDS_variant 5 A13,B2,B42,C49,C73
Chr7:31224966 C T EMS_canonical_SNV CDS_variant 3 B42,C49,C73
Chr7:31224968 G A EMS_canonical_SNV stop_gained 76 A13,A14,A15,A2,A21,A6,A8,B102,B105,B11,B112,B114,B118,B134,B135,B136,B139,B140,B16,B17,B18,B20,B24,B26,B3,B30,B31,B49,B53,B56,B58,B61,B67,B68,B69,B70,B73,B76,B81,B88,B90,B91,B92,B95,B96,C12,C13,C14,C18,C21,C22,C25,C30,C37,C38,C39,C4,C40,C41,C43,C45,C47,C51,C55,C6,C60,C63,C7,C72,C74,C78,C8,C80,C86,C87,D2
Chr7:31224974 G A EMS_canonical_SNV stop_gained 3 B42,C49,C73
Chr7:31224974 G A EMS_canonical_SNV CDS_variant 3 B42,C49,C73
Chr7:31224985 AG A 1bp_deletion frameshift_variant 8 B10,B107,B109,B11,B16,B31,C71,C81
Chr7:31224994 C T EMS_canonical_SNV CDS_variant 2 A3,C74
Chr7:31225013 C T EMS_canonical_SNV CDS_variant 4 B52,C29,C38,D11
Chr7:31225016 G A EMS_canonical_SNV CDS_variant 5 B107,B7,B93,C36,C5
Chr7:31225021 G A EMS_canonical_SNV CDS_variant 1 C71

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057919119.1
ATGGAAGCCATGTTCGAATGCATGCAAGAGACCCAAAGAAGTGTGACCAAGATCCTACAAGATAACAAGAAGTTCAAGCTTGAGACCAGAGGAGCCATATATAATCTGAACACTCAAATGGCCCACATGCAGCAGAACTTTGCCCAGACGAACGTCAACAAGAACAACGGAGAGTTACCCCCACAGATCGTGGTACCTAACAACAAGGCACAAATGAATGCAGTCAACCTGAGGAGTGGCAAGACTTTGCCTGAAGTAGT...

CDS

1 records

下载 CDS FASTA
LOC130994085
ATGGAAGCCATGTTCGAATGCATGCAAGAGACCCAAAGAAGTGTGACCAAGATCCTACAAGATAACAAGAAGTTCAAGCTTGAGACCAGAGGAGCCATATATAATCTGAACACTCAAATGGCCCACATGCAGCAGAACTTTGCCCAGACGAACGTCAACAAGAACAACGGAGAGTTACCCCCACAGATCGTGGTACCTAACAACAAGGCACAAATGAATGCAGTCAACCTGAGGAGTGGCAAGACTTTGCCTGAAGTAGT...

Protein

1 records

下载 Protein FASTA
XP_057775102.1
MEAMFECMQETQRSVTKILQDNKKFKLETRGAIYNLNTQMAHMQQNFAQTNVNKNNGELPPQIVVPNNKAQMNAVNLRSGKTLPEVVHVLKEGSESTNNVEKVDEEIEMEKPPAPELKKNEDFPKAEEKSKHCALCPNVPNFSRRSVPRRSLYIDDAKFHVGEQVSAVLKRDMPIKCNDPGMFYIPCIIRDTRIEQAMLDLGASINVMLLTIYQELKIVPLKPTRVVIQLADKSSVYPEGIVEDVLVKVQDLIFPADFYV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器