当前解析结果
SmilChr07G003018| 统一新 Gene ID | SmilChr07G003018 |
|---|---|
| 名称 | SmilChr07G003018 |
| 描述 | uncharacterized SmilChr07G003018 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 31224933 - 31225937 / - |
| NCBI Gene ID | LOC130994085 |
|---|---|
| GeneID | 130994085 |
| locus_tag | - |
| NCBI Name | LOC130994085 |
| 原始查询 | SmilChr07G003018 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=34; qcov=0.348; evalue=2.38e-08; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057775102.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057775102.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775102.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775102.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775102.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:31224939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr7:31224952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,C49,C73,C77 |
Chr7:31224962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B2,B42,C49,C73 |
Chr7:31224966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,C49,C73 |
Chr7:31224968 |
G |
A |
EMS_canonical_SNV | stop_gained | 76 | A13,A14,A15,A2,A21,A6,A8,B102,B105,B11,B112,B114,B118,B134,B135,B136,B139,B140,B16,B17,B18,B20,B24,B26,B3,B30,B31,B49,B53,B56,B58,B61,B67,B68,B69,B70,B73,B76,B81,B88,B90,B91,B92,B95,B96,C12,C13,C14,C18,C21,C22,C25,C30,C37,C38,C39,C4,C40,C41,C43,C45,C47,C51,C55,C6,C60,C63,C7,C72,C74,C78,C8,C80,C86,C87,D2 |
Chr7:31224974 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B42,C49,C73 |
Chr7:31224974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,C49,C73 |
Chr7:31224985 |
AG |
A |
1bp_deletion | frameshift_variant | 8 | B10,B107,B109,B11,B16,B31,C71,C81 |
Chr7:31224994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,C74 |
Chr7:31225013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,C29,C38,D11 |
Chr7:31225016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B7,B93,C36,C5 |
Chr7:31225021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。