Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003043`

染色体: Chr07 坐标: 31544367-31549356 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003043`
名称	SmilChr07G003043
描述	uncharacterized SmilChr07G003043
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	31544367 - 31549356 / `-`

ID 对照

NCBI Gene ID	`LOC130995929`
GeneID	`130995929`
locus_tag	`-`
NCBI Name	`LOC130995929`
原始查询	`SmilChr07G003043`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoglucomutase, putative / glucose phosphomutase [Source:NCBI gene (formerly Entrezgene);Acc:843419]; symbol=AT1G70820; hit=AT1G70820; species=arabidopsis; confidence=high
产物	phosphoglucomutase, putative / glucose phosphomutase [Source:NCBI gene (formerly Entrezgene);Acc:843419]; symbol=AT1G70820; hit=AT1G70820; species=arabidopsis; confidence=high
Arabidopsis	`AT1G70820` (AT1G70820) phosphoglucomutase, putative / glucose phosphomutase [Source:NCBI gene (formerly Entrezgene);Acc:843419] identity=71.4; qcov=1; evalue=0; confidence=high
Rice	`Os06g0476200` - identity=67.6; qcov=0.92; evalue=0; confidence=high
GO	GO:0004615 (phosphomannomutase activity); GO:0005975 (carbohydrate metabolic process); GO:0009570 (chloroplast stroma)
KEGG	-
Pfam	PF02878 (PGM_PMM_I); PF02879 (PGM_PMM_II); PF02880 (PGM_PMM_III)
InterPro	-
eggNOG	-
NR	GeneID:130995929

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777420.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057777420.1`
3	Nucleus	细胞核	0.00000	`XP_057777420.1`
4	Chromosome	染色体	0.00000	`XP_057777420.1`
5	Centromere	着丝粒	0.00000	`XP_057777420.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:31544525`	`CTA`	`C`	2bp_deletion	frameshift_variant	1	B93
`Chr7:31544525`	`CTA`	`C`	2bp_deletion	CDS_variant	1	B93
`Chr7:31545509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,C65
`Chr7:31545523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,C65
`Chr7:31545987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,D3
`Chr7:31546031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:31547610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:31547641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:31547688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B7,B93,C5
`Chr7:31547774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,B19
`Chr7:31547780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr7:31548921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777420.1

611 aa

306

611

PGM_PMM_I

PGM_PMM_II

PGM_PMM_III

PF02878 PGM_PMM_I 69-207 aa PF02879 PGM_PMM_II 258-344 aa PF02880 PGM_PMM_III 348-449 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777420.1`	Pfam	`PF02878`	PGM_PMM_I	Domain	69	207	4.3e-22	79.0	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
`XP_057777420.1`	Pfam	`PF02879`	PGM_PMM_II	Domain	258	344	5.9e-20	72.3	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
`XP_057777420.1`	Pfam	`PF02880`	PGM_PMM_III	Domain	348	449	9.1e-12	45.8	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921437.1
TGGAAGCTTATTAACAGATATTTCTATCCAAGAATGAATCTGCAAATGTAAGGTTCTCCTTCACTACTCATAATATCTTATCTCCCCAATTAATTTCTTCATTTTTTTTTCCAACTAATTATAACACTTGAAAAATCATTCAAGAGCGCCAAAACATTTCTCCATGGCTTCCACGGCTTCGAACATTTCCTCCAACTCCAAAATCATCTCATCATTTCTAAGTTCAAAACGATTGAATCCAAACAACAGCTTCATCGCAT...

CDS

1 records

下载 CDS FASTA

LOC130995929
ATGGCTTCCACGGCTTCGAACATTTCCTCCAACTCCAAAATCATCTCATCATTTCTAAGTTCAAAACGATTGAATCCAAACAACAGCTTCATCGCATTGCCAACATTTTCTTCAAATAAATTTGCAGTGCGAGTGGAATCTAAGTCCGCCACTGCGAGGTACAGTGAAGTGGTGGTGGATGAGGAGATCGACAAGATCAGGCGGCTGCAGAACGGGTCGGACGTGCGCGGCGTGGCGGTGGAAGGCGAGAAAGGGAGGCA...

Protein

1 records

下载 Protein FASTA

XP_057777420.1
MASTASNISSNSKIISSFLSSKRLNPNNSFIALPTFSSNKFAVRVESKSATARYSEVVVDEEIDKIRRLQNGSDVRGVAVEGEKGRQVNLTPPAVEAIAESFGEWVRNGLEREGEAVRVSLGKDPRISGGVLSVAVFAGLERAGCVGYDMGLATTPACFMSTQLPPFLFDASIMMTASHLPYTRNGLKFFTKKGGLTSSEVEEICEKAGRKYANRQMKVSTALRVPPTKVDLMSAYSNHLRDIIKQRVNHPYHYDFPLQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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