Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003051

染色体: Chr07 坐标: 31824401-31829535 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003051
名称SmilChr07G003051
描述uncharacterized SmilChr07G003051
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向31824401 - 31829535 / +

ID 对照

NCBI Gene IDLOC130995930
GeneID130995930
locus_tag-
NCBI NameLOC130995930
原始查询SmilChr07G003051

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:838925]; symbol=AT1G23170; hit=AT1G23170; species=arabidopsis; confidence=high
产物transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:838925]; symbol=AT1G23170; hit=AT1G23170; species=arabidopsis; confidence=high
ArabidopsisAT1G23170 (AT1G23170)
transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:838925]
identity=55.1; qcov=0.942; evalue=0; confidence=high
RiceOs01g0128400
-
identity=52.9; qcov=0.761; evalue=2.27e-169; confidence=high
GOGO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus)
KEGG-
PfamPF10151 (TMEM214)
InterPro-
eggNOG-
NRGeneID:130995930

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.60000 XP_057777421.1
2 Cytosol 细胞质基质 0.60000 XP_057777421.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057777421.1
4 Nucleus 细胞核 0.00000 XP_057777421.1
5 Chromosome 染色体 0.00000 XP_057777421.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:31825098 C T EMS_canonical_SNV CDS_variant 2 B106,C46
Chr7:31825161 C T EMS_canonical_SNV CDS_variant 1 C70
Chr7:31826651 C T EMS_canonical_SNV CDS_variant 1 C1
Chr7:31827544 G A EMS_canonical_SNV CDS_variant 2 C32,C68
Chr7:31827823 C T EMS_canonical_SNV CDS_variant 1 C52
Chr7:31828027 C T EMS_canonical_SNV CDS_variant 1 B111
Chr7:31828028 C T EMS_canonical_SNV CDS_variant 1 C1
Chr7:31828301 C T EMS_canonical_SNV CDS_variant 4 B137,B138,B42,B43
Chr7:31828407 C T EMS_canonical_SNV CDS_variant 3 B104,B26,B81
Chr7:31829048 C T EMS_canonical_SNV CDS_variant 2 B52,B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057777421.1
586 aa
N
1
293
586
TMEM214
C
PF10151 TMEM214 24-566 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057777421.1 Pfam PF10151 TMEM214 Family 24 566 1.8e-28 100.2 TMEM214, C-terminal, caspase 4 activator

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057921438.1
GCAATATTTTCCATAAGTTGTAGTCCAAATTGGATGGGAATGAATCGGGTAAGAAATCGAGCAAATTAAGTAGGTGAGCGAGTTGAGGGATCTGACTGCAATCCACGTTTTGGAATTGGATATTCAACCATGGCAATATCGTAATTAGATTGAGAAGGGAGCCCAATTCGGTTTCAAACCCAACTACCATTATTTACTCGCTCGCATCGCATCAGACCGTTCTCCTTTCTATTCTCCGATCCGTTCTCCGTCTGATTTTC...

CDS

1 records

下载 CDS FASTA
LOC130995930
ATGGAAGAAGATAAATCATTCTCCTCCATCTCGGAGCCAATCAACCACTCCGACGACAACAACCATGGCTGGCAGAAGGTCACCGCCAAGAAACAGAGGAAAAATCAGAACAAGAAAGCTGCCGCCGATTCCTCTAGATTGCCTAACGGATCCGCGATCGCGCCGGAGAAAATCAGCGTTTTCAAGGGCTTGGAGAAGCACTCGGAGGAACGCCGCCGGAAATTAGAGGCTCAGCGCGCCGCCGCGGTTTATGAAGACGA...

Protein

1 records

下载 Protein FASTA
XP_057777421.1
MEEDKSFSSISEPINHSDDNNHGWQKVTAKKQRKNQNKKAAADSSRLPNGSAIAPEKISVFKGLEKHSEERRRKLEAQRAAAVYEDDDNDNKGRSRNNRGRDEDDDDLSSDADVKNNAVEVHKKEKQKKAKKPKVTVSEAAAKIDADDLVAFLSSVSESYEGQQDIQLMRFADYFGRAFSAVSASQFPWHKLFRESPVAKIADVPVSYISEAVYKASVDWINQRSYEALGTFVVWSLDSILADLTAQQSGSKVSKKGVHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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