当前解析结果
SmilChr07G003051| 统一新 Gene ID | SmilChr07G003051 |
|---|---|
| 名称 | SmilChr07G003051 |
| 描述 | uncharacterized SmilChr07G003051 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 31824401 - 31829535 / + |
| NCBI Gene ID | LOC130995930 |
|---|---|
| GeneID | 130995930 |
| locus_tag | - |
| NCBI Name | LOC130995930 |
| 原始查询 | SmilChr07G003051 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:838925]; symbol=AT1G23170; hit=AT1G23170; species=arabidopsis; confidence=high |
| 产物 | transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:838925]; symbol=AT1G23170; hit=AT1G23170; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G23170 (AT1G23170)transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:838925] identity=55.1; qcov=0.942; evalue=0; confidence=high |
| Rice | Os01g0128400- identity=52.9; qcov=0.761; evalue=2.27e-169; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus) |
| KEGG | - |
| Pfam | PF10151 (TMEM214) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995930 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057777421.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057777421.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057777421.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777421.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777421.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:31825098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C46 |
Chr7:31825161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr7:31826651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:31827544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:31827823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr7:31828027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr7:31828028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:31828301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B137,B138,B42,B43 |
Chr7:31828407 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B26,B81 |
Chr7:31829048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777421.1PF10151
TMEM214 24-566 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777421.1 |
Pfam | PF10151 |
TMEM214 | Family | 24 | 566 | 1.8e-28 | 100.2 | TMEM214, C-terminal, caspase 4 activator |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。