当前解析结果
SmilChr07G003058| 统一新 Gene ID | SmilChr07G003058 |
|---|---|
| 名称 | SmilChr07G003058 |
| 描述 | cysteine-rich receptor-like protein kinase 43 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 31958418 - 31967616 / + |
| NCBI Gene ID | LOC130995950 |
|---|---|
| GeneID | 130995950 |
| locus_tag | - |
| NCBI Name | LOC130995950 |
| 原始查询 | SmilChr07G003058 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 43 |
| 产物 | cysteine-rich receptor-like protein kinase 43 |
| Arabidopsis | AT1G70740 (AT1G70740)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843411] identity=64.3; qcov=0.987; evalue=0; confidence=high |
| Rice | Os01g0784200- identity=51.7; qcov=0.746; evalue=1.11e-102; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995950 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057777456.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057777456.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777456.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777456.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777456.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:31966486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C3,C43,D11,D8 |
Chr7:31966549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B19,D11 |
Chr7:31966685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr7:31966692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,C23,C73 |
Chr7:31967079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B66 |
Chr7:31967093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:31967287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr7:31967293 |
A |
ACT |
2bp_insertion | frameshift_variant | 2 | B2,C43 |
Chr7:31967293 |
A |
ACT |
2bp_insertion | CDS_variant | 2 | B2,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777456.1PF00069
Pkinase 52-315 aa
PF07714
PK_Tyr_Ser-Thr 54-318 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777456.1 |
Pfam | PF00069 |
Pkinase | Domain | 52 | 315 | 2e-48 | 165.8 | Protein kinase domain |
XP_057777456.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 54 | 318 | 1.6e-49 | 169.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。