Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003064`

染色体: Chr07 坐标: 32140364-32148729 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003064`
名称	SmilChr07G003064
描述	phosphoglucomutase, cytoplasmic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	32140364 - 32148729 / `+`

ID 对照

NCBI Gene ID	`LOC130995931`
GeneID	`130995931`
locus_tag	`-`
NCBI Name	`LOC130995931`
原始查询	`SmilChr07G003064`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoglucomutase, cytoplasmic
产物	phosphoglucomutase%2C cytoplasmic
Arabidopsis	`AT1G70730` (PGM2) Phosphoglucomutase/phosphomannomutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843410] identity=86.3; qcov=1; evalue=0; confidence=high
Rice	`Os03g0712700` (PFP) - identity=85.4; qcov=1; evalue=0; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0004614 (phosphoglucomutase activity); GO:0005829 (cytosol); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF02878 (PGM_PMM_I); PF02879 (PGM_PMM_II); PF02880 (PGM_PMM_III); PF24947 (PGM1_C_vert_fung)
InterPro	-
eggNOG	-
NR	GeneID:130995931

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057777422.1`
2	Cytoplasm	细胞质	0.80000	`XP_057777422.1`
3	Nucleus	细胞核	0.00000	`XP_057777422.1`
4	Chromosome	染色体	0.00000	`XP_057777422.1`
5	Centromere	着丝粒	0.00000	`XP_057777422.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:32140604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:32140615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B101
`Chr7:32144344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr7:32145148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr7:32145831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:32147967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:32147993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr7:32148018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr7:32148070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777422.1

583 aa

292

583

PGM_PMM_I

PGM_PMM_II

PGM_PMM_III

PGM1_C_vert_fung

PF02878 PGM_PMM_I 17-164 aa PF02879 PGM_PMM_II 200-311 aa PF02880 PGM_PMM_III 318-418 aa PF24947 PGM1_C_vert_fung 442-580 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777422.1`	Pfam	`PF02878`	PGM_PMM_I	Domain	17	164	1.3e-31	109.8	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
`XP_057777422.1`	Pfam	`PF02879`	PGM_PMM_II	Domain	200	311	5.2e-12	46.8	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
`XP_057777422.1`	Pfam	`PF02880`	PGM_PMM_III	Domain	318	418	5.8e-22	78.7	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
`XP_057777422.1`	Pfam	`PF24947`	PGM1_C_vert_fung	Domain	442	580	7.7e-51	172.7	Phosphoglucomutase-1, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921439.1
ATGGTATTTTTTATTTTAGTTAATTTCTTCACTTTTATAGACACCACTTTAATTCTTTCTACACTCCCCGAAACACTCTCGACACGCACCTCATCATCTACCTTCCCTTTCTGCATAGTTTGAGCCAAGATGGGAACGTTCAAGGTTGCTCGCATCCAGACTTCTCCAATTGATGGCCAGAAACCTGGGACTTCTGGTCTTAGGAAGAAGGTGAAGGTATTCGTGCAACCCCATTACTTGGAAAATTTTGTCCAGTCTAC...

CDS

1 records

下载 CDS FASTA

LOC130995931
ATGGGAACGTTCAAGGTTGCTCGCATCCAGACTTCTCCAATTGATGGCCAGAAACCTGGGACTTCTGGTCTTAGGAAGAAGGTGAAGGTATTCGTGCAACCCCATTACTTGGAAAATTTTGTCCAGTCTACTTTTAATGCCCTTGGAGCTGATAAAATCAAAGGTGCTACACTTGTTGTCTCTGGTGATGGCCGCTACTATTCGAAGGATGCTATCCAGATCATCATCAAAATGGCTGCTGCAAATGGAGTAAGGCGTAT...

Protein

1 records

下载 Protein FASTA

XP_057777422.1
MGTFKVARIQTSPIDGQKPGTSGLRKKVKVFVQPHYLENFVQSTFNALGADKIKGATLVVSGDGRYYSKDAIQIIIKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGADGSKANGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYSNTTTIKEYLIAEGLPNVDISKIGLSNFAGPDGQFDVDVFDSASDYVKLMKSIFDFQSIKKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAKESSLLNCVPKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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