当前解析结果
SmilChr07G003072| 统一新 Gene ID | SmilChr07G003072 |
|---|---|
| 名称 | SmilChr07G003072 |
| 描述 | origin of replication complex subunit 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 32274424 - 32280621 / + |
| NCBI Gene ID | LOC130996039 |
|---|---|
| GeneID | 130996039 |
| locus_tag | - |
| NCBI Name | LOC130996039 |
| 原始查询 | SmilChr07G003072 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | origin of replication complex subunit 1-like |
| 产物 | origin of replication complex subunit 1-like |
| Arabidopsis | AT4G14700 (ORC1A)origin recognition complex 1 [Source:NCBI gene (formerly Entrezgene);Acc:827121] identity=60.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0187000 (OsORC1)- identity=62.2; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0003682 (chromatin binding); GO:0003688 (DNA replication origin binding); GO:0005524 (ATP binding); GO:0005664 (nuclear origin of replication recognition complex); GO:0006270 (DNA replication initiation); GO:0016887 (ATP hydrolysis activity); GO:0033314 (mitotic DNA replication checkpoint signaling) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF00628 (PHD); PF01426 (BAH); PF13191 (AAA_16); PF13401 (AAA_22); PF17872 (AAA_lid_10); PF22606 (Cdc6-ORC-like_ATPase_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777524.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057777524.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057777524.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777524.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777524.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:32274659 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B24 |
Chr7:32274659 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B24 |
Chr7:32274775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr7:32274817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr7:32274874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B34,C38,C79,D11 |
Chr7:32274920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B89,C74,D2 |
Chr7:32275037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,C73,C86 |
Chr7:32275046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:32275054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:32275260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr7:32276086 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B54 |
Chr7:32276086 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777524.1PF00628
PHD 175-219 aa
PF01426
BAH 255-345 aa
PF13191
AAA_16 452-595 aa
PF13401
AAA_22 478-604 aa
PF00004
AAA 481-625 aa
PF22606
Cdc6-ORC-like_ATPase_lid 633-686 aa
PF17872
AAA_lid_10 654-689 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777524.1 |
Pfam | PF00628 |
PHD | Domain | 175 | 219 | 1.6e-09 | 38.3 | PHD-finger |
XP_057777524.1 |
Pfam | PF01426 |
BAH | Domain | 255 | 345 | 5.9e-14 | 52.7 | BAH domain |
XP_057777524.1 |
Pfam | PF13191 |
AAA_16 | Domain | 452 | 595 | 1.8e-09 | 39.1 | AAA ATPase domain |
XP_057777524.1 |
Pfam | PF13401 |
AAA_22 | Domain | 478 | 604 | 2.6e-08 | 34.9 | AAA domain |
XP_057777524.1 |
Pfam | PF00004 |
AAA | Domain | 481 | 625 | 3e-17 | 64.0 | ATPase family associated with various cellular activities (AAA) |
XP_057777524.1 |
Pfam | PF22606 |
Cdc6-ORC-like_ATPase_lid | Domain | 633 | 686 | 8.2e-10 | 39.2 | Cdc6/ORC-like, ATPase lid domain |
XP_057777524.1 |
Pfam | PF17872 |
AAA_lid_10 | Domain | 654 | 689 | 9.6e-11 | 42.4 | AAA lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。