当前解析结果
SmilChr07G003077| 统一新 Gene ID | SmilChr07G003077 |
|---|---|
| 名称 | SmilChr07G003077 |
| 描述 | protein PLANT CADMIUM RESISTANCE 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 32409678 - 32410881 / + |
| NCBI Gene ID | LOC130996042 |
|---|---|
| GeneID | 130996042 |
| locus_tag | - |
| NCBI Name | LOC130996042 |
| 原始查询 | SmilChr07G003077 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein PLANT CADMIUM RESISTANCE 2-like |
| 产物 | protein PLANT CADMIUM RESISTANCE 2-like |
| Arabidopsis | AT1G14870 (PCR2)PLANT CADMIUM RESISTANCE 2 [Source:NCBI gene (formerly Entrezgene);Acc:838052] identity=66; qcov=0.774; evalue=1.09e-66; confidence=high |
| Rice | Os02g0579800 (OsFWL2)- identity=62.9; qcov=0.753; evalue=8.27e-61; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04749 (PLAC8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996042 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057777529.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057777529.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057777529.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777529.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777529.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:32409857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,D7 |
Chr7:32409896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:32410003 |
AT |
A |
1bp_deletion | frameshift_variant | 5 | B76,B90,B92,C21,C87 |
Chr7:32410003 |
AT |
A |
1bp_deletion | CDS_variant | 5 | B76,B90,B92,C21,C87 |
Chr7:32410168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:32410570 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B131 |
Chr7:32410570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:32410653 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | A23,B13,B5,B66,B86,C17,C28,C32,C59,C68 |
Chr7:32410764 |
A |
AT |
1bp_insertion | frameshift_variant | 42 | A14,A15,A21,A22,A6,A7,A8,B1,B101,B110,B113,B115,B3,B4,B46,B47,B51,B54,B63,B78,B88,B91,B98,C1,C10,C14,C19,C24,C31,C35,C48,C49,C51,C52,C64,C66,C8,C83,C9,D10,D11,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777529.1PF04749
PLAC8 53-151 aa
XP_057777530.1PF04749
PLAC8 53-151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777529.1 |
Pfam | PF04749 |
PLAC8 | Family | 53 | 151 | 4.4e-34 | 118.1 | PLAC8 family |
XP_057777530.1 |
Pfam | PF04749 |
PLAC8 | Family | 53 | 151 | 2.4e-34 | 119.0 | PLAC8 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。