Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003097`

染色体: Chr07 坐标: 32749360-32752540 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003097`
名称	SmilChr07G003097
描述	uncharacterized SmilChr07G003097
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	32749360 - 32752540 / `-`

ID 对照

NCBI Gene ID	`LOC130996056`
GeneID	`130996056`
locus_tag	`-`
NCBI Name	`LOC130996056`
原始查询	`SmilChr07G003097`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843402]; symbol=AT1G70650; hit=AT1G70650; species=arabidopsis; confidence=high
产物	Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843402]; symbol=AT1G70650; hit=AT1G70650; species=arabidopsis; confidence=high
Arabidopsis	`AT1G70650` (AT1G70650) Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843402] identity=48.2; qcov=0.848; evalue=2.85e-135; confidence=high
Rice	`Os03g0712200` (OSJNBb0033N16.15) - identity=47.3; qcov=0.983; evalue=4.07e-133; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00641 (Zn_ribbon_RanBP)
InterPro	-
eggNOG	-
NR	GeneID:130996056

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057777542.1`
2	Chloroplast	叶绿体	0.80000	`XP_057777542.1`
3	Nucleus	细胞核	0.00000	`XP_057777542.1`
4	Chromosome	染色体	0.00000	`XP_057777542.1`
5	Centromere	着丝粒	0.00000	`XP_057777542.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:32749871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B71,B78,C60,D7
`Chr7:32749957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:32749971`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B71,C60
`Chr7:32750219`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B83
`Chr7:32750219`	`CTT`	`C`	2bp_deletion	CDS_variant	1	B83
`Chr7:32750392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:32751062`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B87
`Chr7:32751062`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B87
`Chr7:32751194`	`TTA`	`T`	2bp_deletion	frameshift_variant	7	B132,B133,B140,B18,B9,C18,C81
`Chr7:32751209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:32751260`	`C`	`CA`	1bp_insertion	frameshift_variant	1	D10
`Chr7:32751260`	`C`	`CA`	1bp_insertion	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777542.1

521 aa

260

521

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 288-311 aa PF00641 Zn_ribbon_RanBP 332-356 aa PF00641 Zn_ribbon_RanBP 367-393 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777542.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	288	311	1.2e-17	63.6	Zn-finger in Ran binding protein and others
`XP_057777542.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	332	356	1.2e-17	63.6	Zn-finger in Ran binding protein and others
`XP_057777542.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	367	393	1.2e-17	63.6	Zn-finger in Ran binding protein and others

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921559.1
GGTGGTGTTCACATGTTTTAAATAAATAAATTTTCTGTGTAATACAGTTTCGAATTTCGGTGTACAACTGCTGCCATAAAAATCAAAAATTCAAATTTGCAGTGTTGTTGGAAAGTTCATCGCAATGCTAAATGGCTACCTCAAAACCCTAAAGTCCCAATTGCAGAACCCTAAAATTTATTCGCATGGTTCTGTTACTCACTACCCCACTTGCCAAAACCGTTCAATTTATAATCCCGCAATTCAATTTGTCCTGAATG...

CDS

1 records

下载 CDS FASTA

LOC130996056
ATGCTAAATGGCTACCTCAAAACCCTAAAGTCCCAATTGCAGAACCCTAAAATTTATTCGCATGGTTCTGTTACTCACTACCCCACTTGCCAAAACCGTTCAATTTATAATCCCGCAATTCAATTTGTCCTGAATGAAGTTCAGGAATTCCAATCCTCAAAAACCCAGCGCAGCCATCCTGTTCAGAAGGAAGGAGAAGAAGTGTCTTCGCCGCAGAAGCAGCAACAGCAAGCAGTTCTTCCAAGCACCCAGATTTCACA...

Protein

1 records

下载 Protein FASTA

XP_057777542.1
MLNGYLKTLKSQLQNPKIYSHGSVTHYPTCQNRSIYNPAIQFVLNEVQEFQSSKTQRSHPVQKEGEEVSSPQKQQQQAVLPSTQISHPWREWVDLMEKLLKNGYFDEIGNPFANKGEVGGKEANLIRTACLNFARDQYQLIRYLSRKDIIVIAGSGCPSTDRKVVNSGKRLRAHVGINEGNVCSSCILRGDCDRAYVKAREDEGGRTVDVMRFLLTYGLDPVIGSVENKPSLNKNVKESVRTLLKEIVYVKVDEHDHETP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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