Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003152`

染色体: Chr07 坐标: 33456733-33460956 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003152`
名称	SmilChr07G003152
描述	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	33456733 - 33460956 / `+`

ID 对照

NCBI Gene ID	`LOC130996086`
GeneID	`130996086`
locus_tag	`-`
NCBI Name	`LOC130996086`
原始查询	`SmilChr07G003152`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1, mitochondrial
产物	probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 1%2C mitochondrial
Arabidopsis	`AT1G25054` (LpxC4) UDP-3-O-acyl N-acetylglycosamine deacetylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839094] identity=53; qcov=1.03; evalue=2.84e-110; confidence=high
Rice	`Os03g0223900` - identity=50.9; qcov=1.08; evalue=8.21e-107; confidence=high
GO	GO:0008759 (GO:0008759); GO:0009245 (lipid A biosynthetic process)
KEGG	smil00540 (Lipopolysaccharide biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03331 (LpxC)
InterPro	-
eggNOG	-
NR	GeneID:130996086

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057777593.1`
2	Cytoplasm	细胞质	0.20000	`XP_057777594.1`
3	Chloroplast	叶绿体	0.20000	`XP_057777596.1`
4	Nucleus	细胞核	0.00000	`XP_057777593.1`
5	Chromosome	染色体	0.00000	`XP_057777593.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:33456822`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A15
`Chr7:33456822`	`GC`	`G`	1bp_deletion	CDS_variant	1	A15
`Chr7:33456825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr7:33456826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B29,B81,C60
`Chr7:33457000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B136,B46,B82
`Chr7:33457083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr7:33459634`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B19
`Chr7:33459634`	`CT`	`C`	1bp_deletion	CDS_variant	1	B19
`Chr7:33460659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B119,B122,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777593.1

326 aa

163

326

LpxC

PF03331 LpxC 25-316 aa

XP_057777594.1

321 aa

160

321

LpxC

PF03331 LpxC 25-311 aa

XP_057777595.1

300 aa

150

300

LpxC

PF03331 LpxC 25-147 aa PF03331 LpxC 151-290 aa

XP_057777596.1

295 aa

148

295

LpxC

PF03331 LpxC 25-147 aa PF03331 LpxC 151-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777593.1`	Pfam	`PF03331`	LpxC	Family	25	316	1.3e-77	261.7	UDP-3-O-acyl N-acetylglycosamine deacetylase
`XP_057777594.1`	Pfam	`PF03331`	LpxC	Family	25	311	8.1e-80	268.9	UDP-3-O-acyl N-acetylglycosamine deacetylase
`XP_057777595.1`	Pfam	`PF03331`	LpxC	Family	25	147	5.8e-71	239.9	UDP-3-O-acyl N-acetylglycosamine deacetylase
`XP_057777595.1`	Pfam	`PF03331`	LpxC	Family	151	290	5.8e-71	239.9	UDP-3-O-acyl N-acetylglycosamine deacetylase
`XP_057777596.1`	Pfam	`PF03331`	LpxC	Family	25	147	3.6e-73	247.1	UDP-3-O-acyl N-acetylglycosamine deacetylase
`XP_057777596.1`	Pfam	`PF03331`	LpxC	Family	151	285	3.6e-73	247.1	UDP-3-O-acyl N-acetylglycosamine deacetylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921610.1
CACCGATAGCGGAAATAGTCAAAATTAAACATGCGTCGGCGAGAGAATTGGGCAGCAGCAGCAACGGTAGTATTCAAATGAGCGTCGCCGCCGCCTTCAAATCTCTCAAGTCCTCCGCCGTCCTCTCATGGAAACCCACGGGCAATCTGCAGAAAACTGTGACGAATTGCATCGAGAGAACCGGTCGGGGACTCCACTCAGGTGACATATCCACTGTTAGAATTCTTCCGGCGGTGGCCCGCGCCGGCCGGTACTTCATC...

XM_057921611.1
CACCGATAGCGGAAATAGTCAAAATTAAACATGCGTCGGCGAGAGAATTGGGCAGCAGCAGCAACGGTAGTATTCAAATGAGCGTCGCCGCCGCCTTCAAATCTCTCAAGTCCTCCGCCGTCCTCTCATGGAAACCCACGGGCAATCTGCAGAAAACTGTGACGAATTGCATCGAGAGAACCGGTCGGGGACTCCACTCAGGTGACATATCCACTGTTAGAATTCTTCCGGCGGTGGCCCGCGCCGGCCGGTACTTCATC...

CDS

4 records

下载 CDS FASTA

LOC130996086
ATGAGCGTCGCCGCCGCCTTCAAATCTCTCAAGTCCTCCGCCGTCCTCTCATGGAAACCCACGGGCAATCTGCAGAAAACTGTGACGAATTGCATCGAGAGAACCGGTCGGGGACTCCACTCAGGTGACATATCCACTGTTAGAATTCTTCCGGCGGTGGCCCGCGCCGGCCGGTACTTCATCTTCCGGTCGAATATTATTCGCGCATCGATTGATAATGTTGTGAGAGACACGCCTCTGTGCACTGCGCTTTCGAGAGA...

Protein

4 records

下载 Protein FASTA

XP_057777593.1
MSVAAAFKSLKSSAVLSWKPTGNLQKTVTNCIERTGRGLHSGDISTVRILPAVARAGRYFIFRSNIIRASIDNVVRDTPLCTALSRDGYSVRTVEHLLSALEACGVDNCRIEIDGSSNCDRSVEVPIFDGSAREWMEAINQSGLRVATDNGGKSCQKLAPYLSEPVHVLKNDSFIAAIPYSKVCITYGIDYPQQLLLQAPAIGCQWFSSSLLDESIYSNSIAPSRTFCIYEEVEHMRSLGLIKGGSAETAIVCSMSRGWV...

XP_057777594.1
MSVAAAFKSLKSSAVLSWKPTGNLQKTVTNCIERTGRGLHSGDISTVRILPAVARAGRYFIFRSNIIRASIDNVVRDTPLCTALSRDGYSVRTVEHLLSALEACGVDNCRIEIDGSSNCDRSVEVPIFDGSAREWMEAINQSGLRVATDNGGKSCQKLAPYLSEPVHVLKNDSFIAAIPYSKVCITYGIDYPQAPAIGCQWFSSSLLDESIYSNSIAPSRTFCIYEEVEHMRSLGLIKGGSAETAIVCSMSRGWVNPPLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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