Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003190`

染色体: Chr07 坐标: 33956165-33958895 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003190`
名称	SmilChr07G003190
描述	uncharacterized SmilChr07G003190
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	33956165 - 33958895 / `+`

ID 对照

NCBI Gene ID	`LOC130996126`
GeneID	`130996126`
locus_tag	`-`
NCBI Name	`LOC130996126`
原始查询	`SmilChr07G003190`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	semialdehyde dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838046]; symbol=AT1G14810; hit=AT1G14810; species=arabidopsis; confidence=high
产物	semialdehyde dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838046]; symbol=AT1G14810; hit=AT1G14810; species=arabidopsis; confidence=high
Arabidopsis	`AT1G14810` (AT1G14810) semialdehyde dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838046] identity=80.5; qcov=0.961; evalue=0; confidence=high
Rice	`Os03g0760700` - identity=78.7; qcov=0.904; evalue=0; confidence=high
GO	GO:0004073 (aspartate-semialdehyde dehydrogenase activity); GO:0009086 (GO:0009086); GO:0009088 (L-threonine biosynthetic process); GO:0009089 (GO:0009089); GO:0009097 (GO:0009097); GO:0046983 (protein dimerization activity); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00261 (Monobactam biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00300 (Lysine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01118 (Semialdhyde_dh); PF02774 (Semialdhyde_dhC)
InterPro	-
eggNOG	-
NR	GeneID:130996126

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777615.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057777615.1`
3	Nucleus	细胞核	0.00000	`XP_057777615.1`
4	Chromosome	染色体	0.00000	`XP_057777615.1`
5	Centromere	着丝粒	0.00000	`XP_057777615.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:33956377`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B104
`Chr7:33956377`	`AC`	`A`	1bp_deletion	CDS_variant	1	B104
`Chr7:33956385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr7:33956431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:33956469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B61,C19,C31
`Chr7:33956550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr7:33956651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:33956655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C79
`Chr7:33956915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B24,B53,B72,D6
`Chr7:33957746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C35,C40,C60
`Chr7:33958540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777615.1

385 aa

192

385

Semialdhyde_dh

Semialdhyde_dhC

PF01118 Semialdhyde_dh 51-163 aa PF02774 Semialdhyde_dhC 191-371 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777615.1`	Pfam	`PF01118`	Semialdhyde_dh	Domain	51	163	3.1e-34	118.7	Semialdehyde dehydrogenase, NAD binding domain
`XP_057777615.1`	Pfam	`PF02774`	Semialdhyde_dhC	Domain	191	371	9.4e-46	157.0	Semialdehyde dehydrogenase, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921632.1
ATGCCATAGTCAACTATGTATATTTTTGGGTGGGAGAGTCTAACATTTTAGACTGTGAATCCGCCGCCAACCGGGTCAGTTTCCGCTCCATTTAACGGCGCTTATTCAATTCTTAACCCTACGAAAACACAGGCCGCCACCCATTTTCCAATATCCGCCGCCGCAAAGAAATGAAGCTCCCCGCACTCTCCCTTCACCCCCATCACCACCTCACCACCCCCTTCCTCCACAAAACCACCACTTTCCCCGTTGCCCGCTCT...

CDS

1 records

下载 CDS FASTA

LOC130996126
ATGAAGCTCCCCGCACTCTCCCTTCACCCCCATCACCACCTCACCACCCCCTTCCTCCACAAAACCACCACTTTCCCCGTTGCCCGCTCTGCTCCCGCCTCCAATGCCCCCTTCACCGTACGCATGTCCCTCCGCGACGACGGCCCCTCCGTCGCCATCGTCGGAGTCACCGGCGCTGTTGGCCAGGAGTTCCTCTCCGTCATCTCCGACAGAGACTTCCCCTACCGATCCCTCAAGCTGCTCGCCTCCAAACGCTCCGC...

Protein

1 records

下载 Protein FASTA

XP_057777615.1
MKLPALSLHPHHHLTTPFLHKTTTFPVARSAPASNAPFTVRMSLRDDGPSVAIVGVTGAVGQEFLSVISDRDFPYRSLKLLASKRSAGKSVSYENRDYTIEELTESSFDGVDIALFSAGGSISKKFGPIAAEKGTIVVDNSSAFRMHEGVPLVIPEVNPEAMEGIKLGSGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELEQQTREVLEGKEPTCNIFRQQYAFNLFSHNAPILSNGYNE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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