Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003271`

染色体: Chr07 坐标: 34472958-34477924 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003271`
名称	SmilChr07G003271
描述	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	34472958 - 34477924 / `-`

ID 对照

NCBI Gene ID	`LOC130996148`
GeneID	`130996148`
locus_tag	`-`
NCBI Name	`LOC130996148`
原始查询	`SmilChr07G003271`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
产物	alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] 6
Arabidopsis	`AT1G68020` (ATTPS6) UDP-Glycosyltransferase / trehalose-phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843130] identity=79.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os09g0397300` - identity=72.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005829 (cytosol); GO:0005992 (trehalose biosynthetic process); GO:0070413 (GO:0070413)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00982 (Glyco_transf_20); PF02358 (Trehalose_PPase); PF08282 (Hydrolase_3)
InterPro	-
eggNOG	-
NR	GeneID:130996148

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057777637.1`
2	Cytoplasm	细胞质	0.20000	`XP_057777637.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057777637.1`
4	Nucleus	细胞核	0.00000	`XP_057777637.1`
5	Chromosome	染色体	0.00000	`XP_057777637.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:34473213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr7:34473295`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B113
`Chr7:34473295`	`CA`	`C`	1bp_deletion	CDS_variant	1	B113
`Chr7:34474720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr7:34474875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr7:34475625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr7:34475656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:34476528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,C57,C83
`Chr7:34476678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,C57,C83
`Chr7:34476931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777637.1

857 aa

428

857

Glyco_transf_20

Trehalose_PPase

Hydrolase_3

PF00982 Glyco_transf_20 63-552 aa PF02358 Trehalose_PPase 602-836 aa PF08282 Hydrolase_3 731-803 aa

XP_057777638.1

857 aa

428

857

Glyco_transf_20

Trehalose_PPase

Hydrolase_3

PF00982 Glyco_transf_20 63-552 aa PF02358 Trehalose_PPase 602-836 aa PF08282 Hydrolase_3 731-803 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777637.1`	Pfam	`PF00982`	Glyco_transf_20	Family	63	552	3.4e-182	607.1	Glycosyltransferase family 20
`XP_057777637.1`	Pfam	`PF02358`	Trehalose_PPase	Family	602	836	1.9e-78	263.6	Trehalose-phosphatase
`XP_057777637.1`	Pfam	`PF08282`	Hydrolase_3	Domain	731	803	1.8e-08	35.2	haloacid dehalogenase-like hydrolase
`XP_057777638.1`	Pfam	`PF00982`	Glyco_transf_20	Family	63	552	3.4e-182	607.1	Glycosyltransferase family 20
`XP_057777638.1`	Pfam	`PF02358`	Trehalose_PPase	Family	602	836	1.9e-78	263.6	Trehalose-phosphatase
`XP_057777638.1`	Pfam	`PF08282`	Hydrolase_3	Domain	731	803	1.8e-08	35.2	haloacid dehalogenase-like hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921655.1
TATCCATTAGTGCCATGAGATAGGTAGACAAAACTCCAAAGTCCAAGCACATAAAAAAATAAAAATCAAATTTTTATTGTTTTGCTCTCATCAGTTGCACTGTGCTATGTTTCCAGTGTATATAAGAAGCTTTTGATGCACCTCCACTACAAATAAAGATAACAAAAAAGAAACAGTTTTGAGCACTCAGCTCTTCTCCTTTTTCACATTTTTCCCTTTTTCCATAGACTAGGGTTTTTCCCCACTTTTATTTTCTTGTT...

XM_057921654.1
TATCCATTAGTGCCATGAGATAGGTAGACAAAACTCCAAAGTCCAAGCACATAAAAAAATAAAAATCAAATTTTTATTGTTTTGCTCTCATCAGTTGCACTGTGCTATGTTTCCAGTGTATATAAGAAGCTTTTGATGCACCTCCACTACAAATAAAGATAACAAAAAAGAAACAGTTTTGAGCACTCAGCTCTTCTCCTTTTTCACATTTTTCCCTTTTTCCATAGACTAGGGTTTTTCCCCACTTTTATTTTCTTGTT...

CDS

2 records

下载 CDS FASTA

LOC130996148
ATGGTGTCTAGATCATACTCAAATTTGTTAGAGCTAGCTTCTGGGGAAGCTCCATCACCATCTTTTAGCCGTATGAGCCGGCGTATCCCTCGTATTATGACAGTAGCTGGGATAATGTCTGATATTGATGATGATGGTTCGGACAGTGTATCCTCGGATCCATCATCTTCATCTTCTCAAAAGGATAGGATAATTATTGTGGCCAATCAGTTGCCTATAAAGGTGCACAAGAAAACAGATAATAGTAAAGGTTGGACTTT...

Protein

2 records

下载 Protein FASTA

XP_057777637.1
MVSRSYSNLLELASGEAPSPSFSRMSRRIPRIMTVAGIMSDIDDDGSDSVSSDPSSSSSQKDRIIIVANQLPIKVHKKTDNSKGWTFSWDDNSLYLQLKDCLGDEDTEFIYVGCLKEEIHPNDQDEVSQILLETFKCIPTFLPPDLYSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSSWQAYVSVNKIFADRIMEVINPEDDYVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREEILRGLLNS...

XP_057777638.1
MVSRSYSNLLELASGEAPSPSFSRMSRRIPRIMTVAGIMSDIDDDGSDSVSSDPSSSSSQKDRIIIVANQLPIKVHKKTDNSKGWTFSWDDNSLYLQLKDCLGDEDTEFIYVGCLKEEIHPNDQDEVSQILLETFKCIPTFLPPDLYSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSSWQAYVSVNKIFADRIMEVINPEDDYVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREEILRGLLNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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