当前解析结果
SmilChr07G003314| 统一新 Gene ID | SmilChr07G003314 |
|---|---|
| 名称 | SmilChr07G003314 |
| 描述 | uncharacterized SmilChr07G003314 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 35320681 - 35322828 / + |
| NCBI Gene ID | LOC130994159 |
|---|---|
| GeneID | 130994159 |
| locus_tag | - |
| NCBI Name | LOC130994159 |
| 原始查询 | SmilChr07G003314 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=low |
| 产物 | hit=Os12g0142900; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os12g0142900- identity=31; qcov=0.515; evalue=3.55e-46; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994159 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775173.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057775173.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057775173.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057775173.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057775173.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:35320717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A1,B69 |
Chr7:35320728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C27 |
Chr7:35320729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C62 |
Chr7:35320739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B27,D6 |
Chr7:35320753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr7:35320759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B67,C16,C62,D3 |
Chr7:35320786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B57,C33 |
Chr7:35320789 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B57,C33,D11 |
Chr7:35320789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,C33,D11 |
Chr7:35320822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C33 |
Chr7:35320824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B10,B69 |
Chr7:35320850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B91,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775173.1PF19259
Ty3_capsid 37-198 aa
PF03732
PEG10_N-capsid 38-116 aa
PF00098
zf-CCHC 292-308 aa
PF08284
RVP_2 371-498 aa
PF13975
gag-asp_proteas 392-482 aa
PF13650
Asp_protease_2 393-480 aa
PF30863
PRO_PEG10-RTL1 401-500 aa
PF00078
RVT_1 633-715 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775173.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 37 | 198 | 1.5e-11 | 44.8 | Ty3 transposon capsid-like protein |
XP_057775173.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 38 | 116 | 2.2e-12 | 47.8 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057775173.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 292 | 308 | 6.3e-06 | 26.8 | Zinc knuckle |
XP_057775173.1 |
Pfam | PF08284 |
RVP_2 | Domain | 371 | 498 | 6.6e-29 | 101.2 | Retroviral aspartyl protease |
XP_057775173.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 392 | 482 | 3.4e-10 | 41.1 | gag-polyprotein putative aspartyl protease |
XP_057775173.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 393 | 480 | 2.6e-07 | 32.0 | Aspartyl protease |
XP_057775173.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 401 | 500 | 6.1e-08 | 33.8 | PEG10/RTL1 protease domain |
XP_057775173.1 |
Pfam | PF00078 |
RVT_1 | Domain | 633 | 715 | 2.2e-13 | 51.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。