当前解析结果
SmilChr07G003350| 统一新 Gene ID | SmilChr07G003350 |
|---|---|
| 名称 | SmilChr07G003350 |
| 描述 | protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 35971281 - 35987311 / + |
| NCBI Gene ID | LOC130996213 |
|---|---|
| GeneID | 130996213 |
| locus_tag | - |
| NCBI Name | LOC130996213 |
| 原始查询 | SmilChr07G003350 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, chloroplastic |
| 产物 | protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3%2C chloroplastic |
| Arabidopsis | AT1G75010 (ARC3)GTP binding protein [Source:NCBI gene (formerly Entrezgene);Acc:843839] identity=43.6; qcov=0.819; evalue=1.48e-143; confidence=medium |
| Rice | Os09g0555600 (ARC3)- identity=49.8; qcov=0.363; evalue=9.72e-76; confidence=low |
| GO | GO:0005829 (cytosol); GO:0009707 (chloroplast outer membrane); GO:0010020 (chloroplast fission); GO:0035452 (extrinsic component of plastid membrane) |
| KEGG | - |
| Pfam | PF02493 (MORN) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996213 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057777708.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057777710.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057777708.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777708.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777708.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:35971523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C27,C30 |
Chr7:35971634 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C12 |
Chr7:35971634 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C12 |
Chr7:35976497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr7:35980371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:35981036 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr7:35981036 |
GC |
G |
1bp_deletion | CDS_variant | 1 | D4 |
Chr7:35981964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr7:35982326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:35982467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:35986844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777708.1PF02493
MORN 632-653 aa
PF02493
MORN 655-677 aa
PF02493
MORN 678-700 aa
XP_057777709.1PF02493
MORN 627-648 aa
PF02493
MORN 650-672 aa
PF02493
MORN 673-695 aa
XP_057777710.1PF02493
MORN 550-571 aa
PF02493
MORN 573-595 aa
PF02493
MORN 596-618 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777708.1 |
Pfam | PF02493 |
MORN | Repeat | 632 | 653 | 1.1e-09 | 38.3 | MORN repeat |
XP_057777708.1 |
Pfam | PF02493 |
MORN | Repeat | 655 | 677 | 1.1e-09 | 38.3 | MORN repeat |
XP_057777708.1 |
Pfam | PF02493 |
MORN | Repeat | 678 | 700 | 1.1e-09 | 38.3 | MORN repeat |
XP_057777709.1 |
Pfam | PF02493 |
MORN | Repeat | 627 | 648 | 1e-09 | 38.4 | MORN repeat |
XP_057777709.1 |
Pfam | PF02493 |
MORN | Repeat | 650 | 672 | 1e-09 | 38.4 | MORN repeat |
XP_057777709.1 |
Pfam | PF02493 |
MORN | Repeat | 673 | 695 | 1e-09 | 38.4 | MORN repeat |
XP_057777710.1 |
Pfam | PF02493 |
MORN | Repeat | 550 | 571 | 6e-10 | 39.1 | MORN repeat |
XP_057777710.1 |
Pfam | PF02493 |
MORN | Repeat | 573 | 595 | 6e-10 | 39.1 | MORN repeat |
XP_057777710.1 |
Pfam | PF02493 |
MORN | Repeat | 596 | 618 | 6e-10 | 39.1 | MORN repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。