当前解析结果
SmilChr07G003352| 统一新 Gene ID | SmilChr07G003352 |
|---|---|
| 名称 | SmilChr07G003352 |
| 描述 | protein CHROMATIN REMODELING 19 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 35987811 - 35995294 / - |
| NCBI Gene ID | LOC130996215 |
|---|---|
| GeneID | 130996215 |
| locus_tag | - |
| NCBI Name | LOC130996215 |
| 原始查询 | SmilChr07G003352 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CHROMATIN REMODELING 19 |
| 产物 | protein CHROMATIN REMODELING 19 |
| Arabidopsis | AT2G02090 (ETL1)SNF2 domain-containing protein / helicase domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:814740] identity=68.2; qcov=1.03; evalue=0; confidence=high |
| Rice | Os04g0566100- identity=71.2; qcov=0.873; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003682 (chromatin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | - |
| Pfam | PF00176 (SNF2-rel_dom); PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996215 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777712.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057777712.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777712.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777712.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777712.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:35988113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:35989550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B8,C48,C65 |
Chr7:35991031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,C87 |
Chr7:35991519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr7:35991563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B61,C19,C31 |
Chr7:35991883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B61,C19,C31 |
Chr7:35992186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr7:35993621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr7:35993713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C27,C30 |
Chr7:35994639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B80,C70 |
Chr7:35994726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B61,C19,C31 |
Chr7:35994951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B61,C19,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777712.1PF04851
ResIII 199-372 aa
PF00176
SNF2-rel_dom 202-503 aa
PF00270
DEAD 223-375 aa
PF00271
Helicase_C 575-687 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777712.1 |
Pfam | PF04851 |
ResIII | Family | 199 | 372 | 1.1e-05 | 26.1 | Type III restriction enzyme, res subunit |
XP_057777712.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 202 | 503 | 2.6e-66 | 224.4 | SNF2-related domain |
XP_057777712.1 |
Pfam | PF00270 |
DEAD | Domain | 223 | 375 | 7.4e-06 | 26.5 | DEAD/DEAH box helicase |
XP_057777712.1 |
Pfam | PF00271 |
Helicase_C | Domain | 575 | 687 | 2.5e-24 | 86.3 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。