Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003380`

染色体: Chr07 坐标: 36575686-36579659 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003380`
名称	SmilChr07G003380
描述	protein indeterminate-domain 5, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	36575686 - 36579659 / `+`

ID 对照

NCBI Gene ID	`LOC130996236`
GeneID	`130996236`
locus_tag	`-`
NCBI Name	`LOC130996236`
原始查询	`SmilChr07G003380`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein indeterminate-domain 5, chloroplastic-like
产物	protein indeterminate-domain 5%2C chloroplastic-like
Arabidopsis	`AT2G02080` (IDD4) indeterminate(ID)-domain 4 [Source:NCBI gene (formerly Entrezgene);Acc:814739] identity=48.6; qcov=1.02; evalue=7.05e-133; confidence=high
Rice	`Os09g0555700` (OsIDD3) - identity=51.8; qcov=0.874; evalue=2.39e-128; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF12874 (zf-met); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:130996236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777727.1`
2	Chromosome	染色体	0.00000	`XP_057777727.1`
3	Centromere	着丝粒	0.00000	`XP_057777727.1`
4	Chromatin	染色质	0.00000	`XP_057777727.1`
5	Telomere	端粒	0.00000	`XP_057777727.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:36576545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:36576701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B23,D8
`Chr7:36578136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr7:36578151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,D5
`Chr7:36578164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B79,C78,D9
`Chr7:36578236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,D10,D6
`Chr7:36578251`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B5
`Chr7:36578251`	`TC`	`T`	1bp_deletion	CDS_variant	1	B5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777727.1

517 aa

258

517

zf-C2H2

zf-met

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF00096 zf-C2H2 62-84 aa PF12874 zf-met 62-84 aa PF22996 C2H2-2nd_BIRD-IDD 99-133 aa PF22995 C2CH-3rd_BIRD-IDD 137-161 aa PF22992 C2CH-4th_BIRD-IDD 164-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777727.1`	Pfam	`PF00096`	zf-C2H2	Domain	62	84	1.5e-07	32.1	Zinc finger, C2H2 type
`XP_057777727.1`	Pfam	`PF12874`	zf-met	Domain	62	84	0.00027	21.9	Zinc-finger of C2H2 type
`XP_057777727.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	99	133	2.9e-22	79.1	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057777727.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	137	161	4.2e-14	52.6	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057777727.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	164	199	1.2e-24	86.6	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009092452.1
TCTTTTTACATTTCACAGCTGCCCTAAATACGGCAGTTAGAGAGAGAATATGAGATATGTGTTTGCGCCTGTGGACGACACCAAACACATAGAAGACCCTAAGTAGCATCTTTTTCGAAAACCTCATATTTTCACTGAAAGCAAGGGAATACATTACAAGAGTGAAAATTAGGGGAAAATGAGGAGAAGAGAATTGAGTATCACATCACAGATAAGATAATTATCTGTCTATCTATCTATGCCTTGATATTATTTCTCTT...

XM_057921744.1
TTCTTTTTACATTTCACAGCTGCCCTAAATACGGCAGTTAGAGAGAGAATATGAGATATGTGTTTGCGCCTGTGGACGACACCAAACACATAGAAGACCCTAAGTAGCATCTTTTTCGAAAACCTCATATTTTCACTGAAAGCAAGGGAATACATTACAAGAGTGAAAATTAGGGGAAAATGAGGAGAAGAGAATTGAGTATCACATCACAGATAAGATAATTATCTGTCTATCTATCTATGCCTTGATATTATTTCTCT...

CDS

1 records

下载 CDS FASTA

LOC130996236
ATGGCAGCTTCTTCTTCATCAGCTTTCCTTTCATTAAGAGATGAAAACGACAAGCAGCAGCAGCAGCCGGCGGCAGCAGCAGCGGCACCTTCAAACAAGAGGCGGCGGAACCAGCCAGGAAATCCAAATCCGGACGCGGAAGTAATCGCGCTATCGCCCAAGACCCTAATGGCGACGAACCGGTTCGTGTGCGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAGAATCTGCAGCTGCACCGGCGAGGGCACAATCTGCC...

Protein

1 records

下载 Protein FASTA

XP_057777727.1
MAASSSSAFLSLRDENDKQQQQPAAAAAAPSNKRRRNQPGNPNPDAEVIALSPKTLMATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLRQKSTKEVKRKVYLCPEPSCVHHDPARALGDLTGIKKHYSRKHGEKKYKCEKCSKKYAVHSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNLNPPSLSSIGSHLLGLSQQDQINNGGLSSHDILRLGRPGPQYETLVSPGGFRPSPRALFLQPNH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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