当前解析结果
SmilChr07G003382| 统一新 Gene ID | SmilChr07G003382 |
|---|---|
| 名称 | SmilChr07G003382 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 36634903 - 36638258 / - |
| NCBI Gene ID | LOC130996239 |
|---|---|
| GeneID | 130996239 |
| locus_tag | - |
| NCBI Name | LOC130996239 |
| 原始查询 | SmilChr07G003382 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=31.9; qcov=0.774; evalue=8.07e-89; confidence=low |
| Rice | Os11g0681300- identity=26; qcov=0.946; evalue=7.18e-72; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777728.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057777728.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777728.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777728.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777728.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:36635036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B79,D6 |
Chr7:36635078 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | B11,B114,B17,B30,B73,C30 |
Chr7:36635117 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C81 |
Chr7:36635117 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C81 |
Chr7:36635160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,C13,C30,C39,C76 |
Chr7:36635164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B74,B98,C35,C70,D6 |
Chr7:36635185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B20,C70,C72 |
Chr7:36635189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C85 |
Chr7:36635333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B79,D6 |
Chr7:36635378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:36635473 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B129,C25 |
Chr7:36635473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777728.1PF03101
FAR1 58-152 aa
PF21056
ZSWIM1-3_RNaseH-like 243-354 aa
PF10551
MULE 274-366 aa
PF04434
SWIM 567-588 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777728.1 |
Pfam | PF03101 |
FAR1 | Domain | 58 | 152 | 3.6e-16 | 60.4 | FAR1 DNA-binding domain |
XP_057777728.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 243 | 354 | 6.6e-09 | 36.5 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057777728.1 |
Pfam | PF10551 |
MULE | Domain | 274 | 366 | 2.8e-26 | 92.4 | MULE transposase domain |
XP_057777728.1 |
Pfam | PF04434 |
SWIM | Domain | 567 | 588 | 0.00046 | 20.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。