当前解析结果
SmilChr07G003409| 统一新 Gene ID | SmilChr07G003409 |
|---|---|
| 名称 | SmilChr07G003409 |
| 描述 | high mobility group B protein 7-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 37121888 - 37123567 / - |
| NCBI Gene ID | LOC130994566 |
|---|---|
| GeneID | 130994566 |
| locus_tag | - |
| NCBI Name | LOC130994566 |
| 原始查询 | SmilChr07G003409 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | high mobility group B protein 7-like |
| 产物 | high mobility group B protein 7-like |
| Arabidopsis | AT5G23420 (HMGB6)high-mobility group box 6 [Source:NCBI gene (formerly Entrezgene);Acc:832408] identity=58.6; qcov=0.79; evalue=8.88e-57; confidence=high |
| Rice | Os08g0101100 (HMGB)- identity=55.5; qcov=0.755; evalue=3.83e-55; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00505 (HMG_box); PF09011 (HMG_box_2); PF24815 (HMG_WDHD1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994566 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775591.1 |
| 2 | Nucleolus | 核仁 | 0.20000 | XP_057775591.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775591.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775591.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775591.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:37122075 |
CT |
C |
1bp_deletion | frameshift_variant | 6 | B18,B23,C10,C18,C3,C70 |
Chr7:37122798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr7:37123020 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B74,B85 |
Chr7:37123020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,B85 |
Chr7:37123189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,B29,C22 |
Chr7:37123205 |
C |
CT |
1bp_insertion | frameshift_variant | 7 | B13,B18,B29,B85,C22,C37,D10 |
Chr7:37123218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B52,B86 |
Chr7:37123226 |
T |
TC |
1bp_insertion | frameshift_variant | 12 | B13,B18,B29,B30,B38,B42,B85,B9,C28,C37,C55,D10 |
Chr7:37123365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B59,B84,C63,C69 |
Chr7:37123394 |
CT |
C |
1bp_deletion | frameshift_variant | 17 | A10,A2,A8,B100,B21,B45,B59,B62,B71,B80,B84,B94,B96,C13,C63,D1,D7 |
Chr7:37123406 |
G |
A |
EMS_canonical_SNV | stop_gained | 43 | A10,A2,A23,A6,A8,B100,B121,B16,B17,B21,B35,B37,B45,B51,B53,B59,B6,B62,B71,B79,B80,B84,B94,B96,C11,C13,C21,C24,C25,C32,C34,C35,C4,C47,C53,C63,C69,C75,C79,C84,C9,D1,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775591.1PF09011
HMG_box_2 103-168 aa
PF00505
HMG_box 106-171 aa
PF24815
HMG_WDHD1 108-158 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775591.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 103 | 168 | 1.5e-13 | 51.9 | HMG-box domain |
XP_057775591.1 |
Pfam | PF00505 |
HMG_box | Domain | 106 | 171 | 6.2e-20 | 72.1 | HMG (high mobility group) box |
XP_057775591.1 |
Pfam | PF24815 |
HMG_WDHD1 | Domain | 108 | 158 | 1.6e-15 | 57.5 | WDHD1 HMG box |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。