Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003417`

染色体: Chr07 坐标: 37249332-37256704 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003417`
名称	SmilChr07G003417
描述	uncharacterized SmilChr07G003417
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	37249332 - 37256704 / `-`

ID 对照

NCBI Gene ID	`LOC130992856`
GeneID	`130992856`
locus_tag	`-`
NCBI Name	`LOC130992856`
原始查询	`SmilChr07G003417`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:830759]; symbol=AT5G08580; hit=AT5G08580; species=arabidopsis; confidence=high
产物	Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:830759]; symbol=AT5G08580; hit=AT5G08580; species=arabidopsis; confidence=high
Arabidopsis	`AT5G08580` (AT5G08580) Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:830759] identity=60.4; qcov=1.07; evalue=1.45e-170; confidence=high
Rice	`Os02g0221800` - identity=52.9; qcov=0.875; evalue=1.2e-107; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0005783 (endoplasmic reticulum)
KEGG	-
Pfam	PF10591 (SPARC_Ca_bdg); PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130992856

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057773602.1`
2	Endoplasmic reticulum lumen	内质网腔	0.60000	`XP_057773602.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057773602.1`
4	Melanosome	Melanosome	0.20000	`XP_057773602.1`
5	Nucleus	细胞核	0.00000	`XP_057773602.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:37249613`	`ATC`	`A`	2bp_deletion	frameshift_variant	3	B40,C4,C63
`Chr7:37249613`	`ATC`	`A`	2bp_deletion	CDS_variant	3	B40,C4,C63
`Chr7:37252296`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B52,B86
`Chr7:37255330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B20,B92
`Chr7:37255397`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B91,D11
`Chr7:37255397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,D11
`Chr7:37255944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:37255993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B95,C14,C74
`Chr7:37256021`	`G`	`A`	EMS_canonical_SNV	stop_gained	32	A11,A18,A7,B102,B103,B107,B11,B16,B17,B19,B21,B26,B32,B5,B54,B58,B59,B62,B68,B75,B83,C15,C24,C3,C41,C42,C51,C64,C66,C71,C9,D8
`Chr7:37256025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B14,B82,C5
`Chr7:37256059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B37,B69,C38
`Chr7:37256077`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773602.1

369 aa

184

369

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_5

SPARC_Ca_bdg

EF-hand_7

EF-hand_5

PF13499 EF-hand_7 199-259 aa PF13202 EF-hand_5 200-220 aa PF13833 EF-hand_8 238-256 aa PF13202 EF-hand_5 243-255 aa PF10591 SPARC_Ca_bdg 273-343 aa PF13499 EF-hand_7 283-344 aa PF13202 EF-hand_5 284-300 aa PF13202 EF-hand_5 326-342 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773602.1`	Pfam	`PF13499`	EF-hand_7	Domain	199	259	2.6e-22	79.6	EF-hand domain pair
`XP_057773602.1`	Pfam	`PF13202`	EF-hand_5	Domain	200	220	1.2e-20	72.7	EF hand
`XP_057773602.1`	Pfam	`PF13833`	EF-hand_8	Domain	238	256	3.5e-11	43.4	EF-hand domain pair
`XP_057773602.1`	Pfam	`PF13202`	EF-hand_5	Domain	243	255	1.2e-20	72.7	EF hand
`XP_057773602.1`	Pfam	`PF10591`	SPARC_Ca_bdg	Domain	273	343	3.9e-09	37.5	Secreted protein acidic and rich in cysteine Ca binding region
`XP_057773602.1`	Pfam	`PF13499`	EF-hand_7	Domain	283	344	2.6e-22	79.6	EF-hand domain pair
`XP_057773602.1`	Pfam	`PF13202`	EF-hand_5	Domain	284	300	1.2e-20	72.7	EF hand
`XP_057773602.1`	Pfam	`PF13202`	EF-hand_5	Domain	326	342	1.2e-20	72.7	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917619.1
TTTTTGTTAGAGAAGTGAAAATGAAAAACTTAATTTGGCCTAAACTAGTGAATGAAGAAACAAATTCAGGCTCCTTTCCTTCGCCATCTTTTATCCTTTATTCTTTTGGTGAAGTGCAATTTAGTTTTGCGTTTTCCAGCTACACCAGATCTACGCGTAACCTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTATAGATACATGCATTTGTAATTGTAAGGAATAGGAAGCTCCCAAAATGAGCAAAGCTTCA...

CDS

1 records

下载 CDS FASTA

LOC130992856
ATGAGCAAAGCTTCATTGATCGTCTACATCACTGTGGCCGTGGTCGTCCTACTCCTAATCTCCCGCTCCTCCAACAACAAGTCCCACCGCCACCGCCACCGCCGCCTCAAGGTCCGCTCCAACTTCACTTTCACAGCCCCCACCGACCCCCACCACCCGCACGCCGCCTTCGATCCCTTGGTCGCCGAAATCGAGCGCAAGCGCGAGGACAAACAATGGGAGCATCACTACATCCAAGCTCACCACCCTCAGTCCACTCC...

Protein

1 records

下载 Protein FASTA

XP_057773602.1
MSKASLIVYITVAVVVLLLISRSSNNKSHRHRHRRLKVRSNFTFTAPTDPHHPHAAFDPLVAEIERKREDKQWEHHYIQAHHPQSTPTDSPEPEWEDFMNAEDYLNDEDKFNVTNRLVLLFPNIDLDPPDGYVSATELTQWNLKQSQKEVLHRTQREMEVHDKNKDGFVSLSEYEPPSWVVNSDNNSFGYDMGWWKEDHFNAADADGDGQLNITEFNDFLHPSDTTNHKLLQWLCKEEIRERDTDKDGKINFKEFYHGIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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