Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003469`

染色体: Chr07 坐标: 38816480-38822295 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003469`
名称	SmilChr07G003469
描述	uncharacterized SmilChr07G003469
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	38816480 - 38822295 / `-`

ID 对照

NCBI Gene ID	`LOC130992873`
GeneID	`130992873`
locus_tag	`-`
NCBI Name	`LOC130992873`
原始查询	`SmilChr07G003469`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827751]; symbol=EMB1895; hit=AT4G20060; species=arabidopsis; confidence=low
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827751]; symbol=EMB1895; hit=AT4G20060; species=arabidopsis; confidence=low
Arabidopsis	`AT4G20060` (EMB1895) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827751] identity=30.2; qcov=1.02; evalue=1.82e-105; confidence=low
Rice	`Os01g0103700` - identity=39.5; qcov=0.089; evalue=1.47e-06; confidence=weak
GO	GO:0032039 (integrator complex); GO:0034472 (snRNA 3'-end processing)
KEGG	-
Pfam	PF22966 (INTS7_C_plants); PF24436 (INTS7_N)
InterPro	-
eggNOG	-
NR	GeneID:130992873

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773613.1`
2	Nucleus membrane	核膜	0.60000	`XP_057773613.1`
3	Chromosome	染色体	0.00000	`XP_057773613.1`
4	Centromere	着丝粒	0.00000	`XP_057773613.1`
5	Chromatin	染色质	0.00000	`XP_057773613.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:38816551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B93,C20
`Chr7:38816772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr7:38816940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr7:38816997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:38818319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:38818369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,D6
`Chr7:38818663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:38818885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:38818909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C27,D10
`Chr7:38819174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:38819261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr7:38819569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773613.1

1156 aa

578

1156

INTS7_N

INTS7_C_plants

PF24436 INTS7_N 70-515 aa PF22966 INTS7_C_plants 978-1151 aa

XP_057773614.1

969 aa

484

969

INTS7_N

INTS7_C_plants

PF24436 INTS7_N 2-306 aa PF22966 INTS7_C_plants 791-964 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773613.1`	Pfam	`PF24436`	INTS7_N	Repeat	70	515	3.7e-35	122.7	Integrator complex subunit 7, N-terminal
`XP_057773613.1`	Pfam	`PF22966`	INTS7_C_plants	Domain	978	1151	3.1e-59	200.1	Integrator complex subunit 7, C-terminal domain in plants
`XP_057773614.1`	Pfam	`PF24436`	INTS7_N	Repeat	2	306	3.3e-14	53.6	Integrator complex subunit 7, N-terminal
`XP_057773614.1`	Pfam	`PF22966`	INTS7_C_plants	Domain	791	964	2.2e-59	200.6	Integrator complex subunit 7, C-terminal domain in plants

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917630.1
AATCATCAAATTATACGGGCCACTGTGATGATTGTTTTTCCTGTACTCATCTTCTCCTCCTTTCTGTCTATTCTCTCCTCCCATTTCTCTCTCTATAAATGATGGGTTATCAAGCTAGGAATATTTTAGAACCAAAACTCCCCACTGTGCGTCATCTTTTCATATGATTAGTCGTATGGAGCGAACCCCAGCAGCTTGTGCCATGGACTGGAGCATTCAGCTCCAAAAAAGCCTTCGTTCAAAAATACCAGGTAAACGTA...

XM_057917631.1
TGTCAAGTTTGGTTGCTGGTGATGTTCTTGAGGTATGATGATGAAGCACCACATATCATCGAGGGATTTAAGCTTTCATGTGAAATCTCGAAACTATCAATTGTGATCTTCTGGAGATTCTTGTAAAGCTGAGATTAAAGGTGAAGGCCGCGTATTTTGCTGCAGGCTGCTTATCTGAGATGTCAGATGACTTCGCTAATGTTTTCTTGGAGATACTTAGGACAACAATCTTGTCACAGGAGATATCAAAAGACATAAAG...

CDS

2 records

下载 CDS FASTA

LOC130992873
ATGATTAGTCGTATGGAGCGAACCCCAGCAGCTTGTGCCATGGACTGGAGCATTCAGCTCCAAAAAAGCCTTCGTTCAAAAATACCAGGTAAACGTATTGAGGCCCTAGAAGAAATGGGCAGGCGGCTTGAGTGGTGGAACATGGAGCCAAAATTGACGTTTGCAGAGTACAGAATATTTGGCTTAATCCCCGGGGAGGATAAGCTGTTCCTTAATGCTATTTTTCTGTGCCTGGCTGATGCATTTAGGTCCGGCAACAA...

LOC130992873
ATGTCAGATGACTTCGCTAATGTTTTCTTGGAGATACTTAGGACAACAATCTTGTCACAGGAGATATCAAAAGACATAAAGTTAGCTGCAGGACGAGCATTTGCCAAATTGAGGTGCTCATTTTCAGTTGCAGAGAAGGCATACAAGTTAGGTTTGAAGCTCCTCATGGATTCTTCAGAAGATGACTTCTCAGCTATCATGCTAATTTCACTTTCCAGAGTTGCTTCTCGGTGGATGCTTCTAGTTCCTAGTCAGATAGA...

Protein

2 records

下载 Protein FASTA

XP_057773613.1
MISRMERTPAACAMDWSIQLQKSLRSKIPGKRIEALEEMGRRLEWWNMEPKLTFAEYRIFGLIPGEDKLFLNAIFLCLADAFRSGNKQTKECVVRIFVRMKRRKDRDDVGVLSKEKLENYLELLSRVKEVFDKGDAEERGLALLLLGCWAYLAKDCPDVRYIVLSSLVAGDVLEVKAAYFAAGCLSEMSDDFANVFLEILRTTILSQEISKDIKLAAGRAFAKLRCSFSVAEKAYKLGLKLLMDSSEDDFSAIMLISLSR...

XP_057773614.1
MSDDFANVFLEILRTTILSQEISKDIKLAAGRAFAKLRCSFSVAEKAYKLGLKLLMDSSEDDFSAIMLISLSRVASRWMLLVPSQIELLTLFQNEDRSLRMQATSLRCFRFLVAREVCMFPSTTGTVHKLFGMLHRYELHPTLQLESLRILYKFLLIILSITPCMEIPELFQKLFVVVQKMLISSVRSNRVLAVSVLADLSGKVLGRQDMWSGGSDYTLASQVISFILDQVLSLVTPIVGNNKADFPVELEVKSLLKILF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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