Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003476`

染色体: Chr07 坐标: 38981974-39000696 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003476`
名称	SmilChr07G003476
描述	MAP3K epsilon protein kinase 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	38981974 - 39000696 / `+`

ID 对照

NCBI Gene ID	`LOC130992872`
GeneID	`130992872`
locus_tag	`-`
NCBI Name	`LOC130992872`
原始查询	`SmilChr07G003476`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MAP3K epsilon protein kinase 1-like
产物	MAP3K epsilon protein kinase 1-like
Arabidopsis	`AT3G13530` (MAPKKK7) mitogen-activated protein kinase kinase kinase 7 [Source:NCBI gene (formerly Entrezgene);Acc:820555] identity=66.4; qcov=1.02; evalue=0; confidence=high
Rice	`Os04g0660500` (OsMAPKKKepsilon) - identity=58.8; qcov=1.02; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130992872

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057773611.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057773612.1`
3	Cytoplasm	细胞质	0.60000	`XP_057773611.1`
4	Golgi apparatus	高尔基体	0.60000	`XP_057773612.1`
5	Nucleus	细胞核	0.00000	`XP_057773611.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:38989620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C38,C50
`Chr7:38989794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,D6
`Chr7:38989847`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B82
`Chr7:38989847`	`TG`	`T`	1bp_deletion	CDS_variant	1	B82
`Chr7:38990791`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B91
`Chr7:38990791`	`GA`	`G`	1bp_deletion	CDS_variant	1	B91
`Chr7:38995421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:38995896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,D6
`Chr7:38995904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr7:38996767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:38996793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:38997286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773611.1

1414 aa

707

1414

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 21-274 aa PF07714 PK_Tyr_Ser-Thr 22-270 aa

XP_057773612.1

1229 aa

614

1229

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 1-85 aa PF00069 Pkinase 1-89 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773611.1`	Pfam	`PF00069`	Pkinase	Domain	21	274	1.8e-72	244.6	Protein kinase domain
`XP_057773611.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	22	270	1.2e-50	173.0	Protein tyrosine and serine/threonine kinase
`XP_057773612.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	1	85	2e-11	44.4	Protein tyrosine and serine/threonine kinase
`XP_057773612.1`	Pfam	`PF00069`	Pkinase	Domain	1	89	5.6e-15	56.2	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917628.1
ATTGGTATTTCTTTTACCCGTTAATTGAAGTGTGAAAATAAAGTAGGAAATTAATGCACGATCTTCTCCTCCGTCCTCCGCCGCGGAACTGAACGGCCGAGAGTCTCTTGATAGTCACTCTGCCGTCAACTGTTTCCTCATTAATTCGTCGTGGTTTACTCTTCCGAATCCCAAACATACAATTATAATCACAATGATATGTGATTATCGAATGAAGGCAGAATTTTCCGCGAATTAGGGTTCCATTCTAGTTAGAACTT...

XM_057917629.1
CTGCATGAACAAGGTGTGATTCATCGTGATATCAAAGGGGCAAATATCCTGACAACAAAAGAGATTTTGGGGTTGCTACAAAACTTACTGAAGCAGATGTTAATACTCATTCTGTTGTTGGAACACCTTATTGGATGGCCCCTGAGGTCATTGAAATGTCAGGAGTTTGTGCTGCATCTGACATTTGGAGTGTAGGCTGCACTGTAATTGAACTTCTAACATGTGTTCCACCGTACTTTGATCTGCAGCCAATGCCTGCC...

CDS

2 records

下载 CDS FASTA

LOC130992872
ATGGCGCGGCAAATGACGTCTTCCGCTTTCCACAAATCAAAAACGCTTGACAACAAATATATGCTCGGAGATGAGATTGGAAAAGGGGCTTATGGAAGAGTCTACAAGGGTTTGGATTTGGAAAATGGAGATTTTGTTGCAATCAAGCAAGTTTCCCTCGAGAACATTGCTCAGGAGGATCTCAACATCATTATGCAAGAGATCGATCTGCTAAAGAATCTGAATCATAAGAATATTGTGAAATATCTTGGATCTTTGAA...

LOC130992872
ATGGCCCCTGAGGTCATTGAAATGTCAGGAGTTTGTGCTGCATCTGACATTTGGAGTGTAGGCTGCACTGTAATTGAACTTCTAACATGTGTTCCACCGTACTTTGATCTGCAGCCAATGCCTGCCCTCTTTAGGATTGTACAGGATGAACATCCTCCAATTCCAGATAGTCTATCTCCAGCTATTACAGATTTCCTTCGTCAATGCTTTAAAAAGGATGCTGGACAGAGGCCTGATGCAAAGACATTACTTTCACACCA...

Protein

2 records

下载 Protein FASTA

XP_057773611.1
MARQMTSSAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYFDLQPMPALFRIVQDEHPPIPDSLSPAITDFLRQCFKKDAG...

XP_057773612.1
MAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYFDLQPMPALFRIVQDEHPPIPDSLSPAITDFLRQCFKKDAGQRPDAKTLLSHHWIKNSRRALQNTLRHSGTLRNIEEVGAGGADISSSEQGHTIETSSAEKDKAEMSSSETSVVSKSYEDESLKTNLTEERTNNLEEDTISDQVPTFVIHEKSPIETSSSRLLDSHESATSNSVEDQRSNLNQQGEMLINGVVEGAESTKRTVVARKVEKKGSAVGIIHGKFSFGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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