当前解析结果
SmilChr07G003477| 统一新 Gene ID | SmilChr07G003477 |
|---|---|
| 名称 | SmilChr07G003477 |
| 描述 | uncharacterized SmilChr07G003477 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 39021199 - 39025856 / - |
| NCBI Gene ID | LOC130994205 |
|---|---|
| GeneID | 130994205 |
| locus_tag | - |
| NCBI Name | LOC130994205 |
| 原始查询 | SmilChr07G003477 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=34.1; qcov=0.086; evalue=2.07e-17; confidence=weak |
| Rice | Os12g0142900- identity=31; qcov=0.27; evalue=1.42e-62; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994205 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057775222.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057775222.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057775222.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775222.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775222.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:39021208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:39021210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B29,B84,C35,D6 |
Chr7:39021218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B93,C19,C75 |
Chr7:39021252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B14,C39 |
Chr7:39021258 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B129 |
Chr7:39021258 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B129 |
Chr7:39021284 |
GC |
G |
1bp_deletion | frameshift_variant | 9 | B125,B15,B17,B29,B34,B84,B92,C35,D6 |
Chr7:39021293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:39021305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr7:39021313 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B117,B130,B4,B41,B75,C51,C52,C7 |
Chr7:39021314 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B126,B59,B65,B97,C18,C2,C8 |
Chr7:39021351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775222.1PF00078
RVT_1 656-816 aa
PF17919
RT_RNaseH_2 879-976 aa
PF17917
RT_RNaseH 905-1008 aa
PF13456
RVT_3 1073-1134 aa
PF17921
Integrase_H2C2 1234-1287 aa
PF00665
rve 1307-1402 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775222.1 |
Pfam | PF00078 |
RVT_1 | Domain | 656 | 816 | 2.1e-34 | 119.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057775222.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 879 | 976 | 1.3e-23 | 83.7 | RNase H-like domain found in reverse transcriptase |
XP_057775222.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 905 | 1008 | 3.1e-23 | 82.6 | RNase H-like domain found in reverse transcriptase |
XP_057775222.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1073 | 1134 | 3.7e-08 | 34.0 | Reverse transcriptase-like |
XP_057775222.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1234 | 1287 | 2.9e-08 | 34.4 | Integrase zinc binding domain |
XP_057775222.1 |
Pfam | PF00665 |
rve | Domain | 1307 | 1402 | 4.1e-11 | 43.7 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。