当前解析结果
SmilChr07G003553| 统一新 Gene ID | SmilChr07G003553 |
|---|---|
| 名称 | SmilChr07G003553 |
| 描述 | uncharacterized SmilChr07G003553 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 41300718 - 41301125 / + |
| NCBI Gene ID | LOC130994223 |
|---|---|
| GeneID | 130994223 |
| locus_tag | - |
| NCBI Name | LOC130994223 |
| 原始查询 | SmilChr07G003553 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=32.9; qcov=0.519; evalue=3.35e-06; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994223 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775242.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057775242.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057775242.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775242.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775242.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:41300745 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A20,B102,B56,B62,B93,B97,C34 |
Chr7:41300766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B21,C31,C32,C68 |
Chr7:41300772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B62,B93,C34,C40 |
Chr7:41300801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B139,B57,B65,D5 |
Chr7:41300826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C39 |
Chr7:41300908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C69 |
Chr7:41300913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,C35 |
Chr7:41300924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B56,B64,C57,C63 |
Chr7:41300943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B65 |
Chr7:41300952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:41300973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B99 |
Chr7:41300985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,B86,C63 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。