Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003587`

染色体: Chr07 坐标: 41887044-41888343 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003587`
名称	SmilChr07G003587
描述	uncharacterized SmilChr07G003587
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	41887044 - 41888343 / `-`

ID 对照

NCBI Gene ID	`LOC130992990`
GeneID	`130992990`
locus_tag	`-`
NCBI Name	`LOC130992990`
原始查询	`SmilChr07G003587`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DUF2996 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814937]; symbol=AT2G04039; hit=AT2G04039; species=arabidopsis; confidence=low
产物	DUF2996 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814937]; symbol=AT2G04039; hit=AT2G04039; species=arabidopsis; confidence=low
Arabidopsis	`AT2G04039` (AT2G04039) DUF2996 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814937] identity=67.8; qcov=0.383; evalue=7.66e-24; confidence=low
Rice	`Os07g0607800` (OSJNBa0072I06.32) - identity=64.3; qcov=0.364; evalue=1.6e-23; confidence=low
GO	-
KEGG	-
Pfam	PF11210 (DUF2996)
InterPro	-
eggNOG	-
NR	GeneID:130992990

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773691.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057773692.1`
3	Chloroplast stroma	叶绿体基质	0.60000	`XP_057773691.1`
4	Nucleus	细胞核	0.00000	`XP_057773691.1`
5	Chromosome	染色体	0.00000	`XP_057773691.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:41887187`	`C`	`T`	EMS_canonical_SNV	stop_gained	127	A11,A13,A18,A23,A25,A3,A4,A5,A7,A8,B1,B100,B102,B105,B108,B109,B111,B112,B113,B115,B117,B12,B123,B124,B127,B128,B129,B131,B132,B138,B14,B140,B15,B19,B20,B24,B29,B32,B33,B36,B37,B38,B39,B40,B42,B43,B44,B46,B47,B48,B49,B50,B51,B52,B54,B55,B56,B57,B58,B59,B6,B62,B67,B68,B69,B7,B70,B74,B75,B76,B79,B84,B87,B9,B91,B93,B95,B96,B98,B99,C1,C11,C12,C13,C15,C16,C18,C19,C2,C22,C23,C26,C29,C31,C34,C36,C38,C4,C41,C42,C43,C45,C46,C53,C55,C60,C65,C67,C69,C71,C73,C74,C75,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,D11,D3,D5
`Chr7:41887200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:41887248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:41887256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C30
`Chr7:41887295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr7:41887338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:41887417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr7:41887418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:41887462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:41887577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,B86
`Chr7:41887591`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	A14,A8,B3,B46,B88,B93,C25
`Chr7:41887644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773691.1

198 aa

198

DUF2996

PF11210 DUF2996 84-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773691.1`	Pfam	`PF11210`	DUF2996	Family	84	189	9.7e-15	55.8	Protein of unknown function (DUF2996)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917709.1
AAAAAGGAACAAAAGATTTGTTGGATGTTTTATAGAAAAATCAGTGGCACGCATGCACTTAACCAATATGTGGATGATAGAGCTGCTTCATCTTCCTCCATGTTGCCGTTGGCAGTATCCACATTCTCAAAGTTGACACCAAAAAAAAAAAAAAAAACGTTGAAAAAATATATTTGAAGATGCTTGATTGATTAAACAATACAAAAGAGAATCGCAAACACTTCCTACAACAATACAAGAAAAATGGCGACAACAGGAGG...

XM_057917708.1
AAAAAGGAACAAAAGATTTGTTGGATGTTTTATAGAAAAATCAGTGGCACGCATGCACTTAACCAATATGTGGATGATAGAGCTGCTTCATCTTCCTCCATGTTGCCGTTGGCAGTATCCACATTCTCAAAGTTGACACCAAAAAAAAAAAAAAAAACGTTGAAAAAATATATTTGAAGATGCTTGATTGATTAAACAATACAAAAGAGAATCGCAAACACTTCCTACAACAATACAAGAAAAATGGCGACAACAGGAGG...

CDS

2 records

下载 CDS FASTA

LOC130992990
ATGGCGACAACAGGAGGATCTGTTGCTGCTTTCAGATGCCCATCTTATTTGTGCCAGAAAAGCAGATCATCATCATCACTGGTTGTGAGTGTAATCAGCCACCGGAGAAACACGTGCTGTTTAGCAGTTCAAGAGCCATCTACATCCACAGTTGCTGCTGAAAAAAAGAAGGAAAAAGAAGCGGTGGAAGACGCAACTGCAGAGACTTCTAAACCAGAGCCAAAGGCAAAGGCAAAGCCAAAGCCAAAGGTTGCAGCAAA...

Protein

2 records

下载 Protein FASTA

XP_057773691.1
MATTGGSVAAFRCPSYLCQKSRSSSSLVVSVISHRRNTCCLAVQEPSTSTVAAEKKKEKEAVEDATAETSKPEPKAKAKPKPKVAAKALPEMMEEDVIPSLKATLEAQQDISELELSFNENKLEGSFVKKEIPYSFWAFFPDGTLNGPKGFSISSYGRGVSTVEPFLVDEKKPTSKHVVFWVEKRLAAQGIIPVWQDW

XP_057773692.1
MATTGGSVAAFRCPSYLCQKSRSSSSLVVSVISHRRNTCCLAVQEPSTSTVAAEKKKEKEAVEDATAETSKPEPKAKAKPKPKVAAKALPEMMEEDVIPSLKATLEAQQDISELELSFNENKLEGSFVKKEIPYSFWAFFPDGTLNGFLHILIW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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