当前解析结果
SmilChr07G003608| 统一新 Gene ID | SmilChr07G003608 |
|---|---|
| 名称 | SmilChr07G003608 |
| 描述 | uncharacterized SmilChr07G003608 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 42320059 - 42321856 / - |
| NCBI Gene ID | LOC130994239 |
|---|---|
| GeneID | 130994239 |
| locus_tag | - |
| NCBI Name | LOC130994239 |
| 原始查询 | SmilChr07G003608 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| 产物 | DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=33.2; qcov=0.475; evalue=1.39e-21; confidence=low |
| Rice | Os01g0527900- identity=28.2; qcov=0.812; evalue=5.57e-21; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775261.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775261.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775261.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775261.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775261.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:42320064 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A16,A25,B103,B111,B131,B133,B16,B36,B49,B50,B56,B57,B58,B6,B72,B74,B79,B85,B87,B95,B96,C1,C19,C35,C38,C4,C40,C41,C43,C60,C7,C72,C73,C82,D1 |
Chr7:42320078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B61,C31 |
Chr7:42320090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A9,B13,B133,B136 |
Chr7:42320112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:42320113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B8,C3 |
Chr7:42320123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B8,C3,D11 |
Chr7:42320747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:42320766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr7:42320792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr7:42320880 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:42320887 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A1,B117,B131,B23,B57,B75,C31,C56,C75,C83 |
Chr7:42320899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C37 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。